Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0928
         (628 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   1.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    23   2.1  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.4  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 376 VNNGLGMIEDADPILITTPFSLFTISGKTMRV 281
           +NNG   +ED DP L T     F   G   R+
Sbjct: 34  LNNGKFTVEDIDPTLCTHLIYSFVGLGDDSRI 65


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 354 IIPSPLLTVYAATKAYVDKFSEGLDMEYSKKGI 452
           ++PS +  VY    A   +F+E  D++ S K +
Sbjct: 433 LVPSKIRDVYFLRLAICSRFTEKADIDISWKEV 465


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 544 PIGDQSSSATXPRNTGIPAPRG 609
           P G+  +  T   + G P+PRG
Sbjct: 48  PAGNAHTGPTGTHDAGFPSPRG 69


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 13/53 (24%), Positives = 20/53 (37%)
 Frame = +1

Query: 406 ISSRRVSIWSTRRRVSLYNVSYPVSCARTCPVFVELAIRAHGQGLRPIGDQSS 564
           +S ++V IW   RRV       P +  +         +R      RP  + SS
Sbjct: 156 LSEKQVKIWFQNRRVKYKKEDLPAAAGKASNGNKCCCLRTCSSAKRPKFENSS 208


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 169 PKYRFPGQQFPSQCSRKSYRP 107
           P Y+   Q  PSQ   + Y+P
Sbjct: 332 PPYQISAQPTPSQSPNQIYQP 352


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,161
Number of Sequences: 336
Number of extensions: 2765
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)