Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0928
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 54 2e-08
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar... 48 1e-06
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 42 7e-05
SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces pomb... 39 5e-04
SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces ... 31 0.10
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.3
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 26 3.9
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 3.9
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 26 3.9
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 26 3.9
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 5.1
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDD-KIYENIEKEIAGLEIGTLVNN 177
++VL+SR+ +KL A A+E+E KV T+ I D+++ + +E + +++ G I L+NN
Sbjct: 83 NVVLISRTQEKLDALAKELETVAKVKTRTIAIDYTKTTAETFEKLHQDLVGTPITVLINN 142
Query: 178 VGVSYTYPEYFLD 216
VG S+ P F +
Sbjct: 143 VGQSHYMPTSFAE 155
Score = 53.6 bits (123), Expect = 2e-08
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Frame = +3
Query: 288 IVLPEMVKREKG---VVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEYSKKGIVV 458
I+L E K EKG +++ +GS + ++PSP L+ YA +KA++ +S L E K+GI V
Sbjct: 182 IMLRERQKNEKGPRCLILTMGSFAGLLPSPYLSTYAGSKAFLSNWSASLGEEVKKQGIDV 241
Query: 459 QCILPGFVCSNMSGI 503
C V S MS +
Sbjct: 242 WCFNSYLVVSAMSKV 256
>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 47.6 bits (108), Expect = 1e-06
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKG----VVINIGSASSIIPSPLLTVYAATKAYVDKFSEGL 425
N+V+ K++++ + E + + +++NI S S P +VYAA+KA ++ F++ L
Sbjct: 106 NLVSAIKLSKMAILEWFRNKNSERDRLILNISSRLSTYALPGTSVYAASKAGLESFTKVL 165
Query: 426 DMEYSKKGIVVQCILPGFVCSNM 494
E + KGI V I PG+V + M
Sbjct: 166 AAEVASKGIRVNAISPGYVDTPM 188
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 41.9 bits (94), Expect = 7e-05
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
NV+ + MTR VLP + KG ++N+GS + +VY +TK+ + +F+ L E
Sbjct: 117 NVLGMMAMTRAVLPIFYSKNKGDILNVGSIAGRESYVGGSVYCSTKSALAQFTSALRKET 176
Query: 438 SKKGIVVQCILPGFVCSNMS 497
I + + PG V + S
Sbjct: 177 IDTRIRIMEVDPGLVETEFS 196
Score = 34.7 bits (76), Expect = 0.011
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 4 IVLVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKI---YENIEKEIAGLEIGTLVN 174
++L +R ++ A+E+E +Y+V+ ++ D S+ I E++ KE A +++ L+N
Sbjct: 34 LILAARRFSTVEEIAKELESKYEVSVLPLKLDVSDLKSIPGVIESLPKEFADIDV--LIN 91
Query: 175 NVGVS 189
N G++
Sbjct: 92 NAGLA 96
>SPAC922.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 39.1 bits (87), Expect = 5e-04
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = +3
Query: 285 RIVLPEMVKREKG-VVINIGSASSII--PSPLLTVYAATKAYVDKFSEGLDMEYSKKGIV 455
R V+P M K+ KG ++NIGS + I SP Y+A KA ++ ++ L + Y GI
Sbjct: 113 RYVIPHMAKQGKGGSIVNIGSVNGHIYLGSP---AYSAAKAGLENLTKALAVRYGPLGIR 169
Query: 456 VQCILPGFVCS 488
V PG + S
Sbjct: 170 VNVCAPGTIWS 180
Score = 33.1 bits (72), Expect = 0.034
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 ATKIIQADFSEDDKIYENIEKEIAGL-EIGTLVNNVGVSYTYPEYFLDLPEWDKLIPTLI 252
A +QAD S+ D+I IEK I L I L+NN G++ P L WD + ++
Sbjct: 46 AALALQADVSKADQIETAIEKVIQTLGPIDVLINNAGLADDTPFEQLSHESWDHDVSLVL 105
Query: 253 K 255
+
Sbjct: 106 R 106
>SPAC22A12.17c |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 261
Score = 31.5 bits (68), Expect = 0.10
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 243 NSDQANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPS--PLLTVYAATKAYVDKFS 416
N N++ V + P K+ G ++ S S ++ + Y +KA V +
Sbjct: 124 NEINVNLLGVFNVAHNAGPIFQKQGHGSLVATASMSGVVVNVPQQQCAYNTSKAGVIQLI 183
Query: 417 EGLDMEYSKKGIVVQCILPGFVCSNMSG 500
+ L +E+ +K V C+ PG+ S+M+G
Sbjct: 184 KSLAVEW-RKFARVNCVSPGYTTSDMTG 210
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKEIAGLEI 159
DI++ + ++ LK + KE++ + E + +N+ KE+ GL++
Sbjct: 218 DILIPASAMKDLKDRKNALAKEFEESQPGSSLTLKEQANVIDNLRKEVFGLKL 270
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 91 QADFSEDDKIYENIEKEIAGLEIGTLVNN 177
+ADFSE+D +Y +EK L L N
Sbjct: 105 KADFSENDLVYSELEKNEGNLASLYLTGN 133
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 107 RTIRFTRTLRRKLLAWKSVLWSIMSEF 187
R++ T+ + KLLA+ LWS++ F
Sbjct: 425 RSLEVTKLSKEKLLAYTKKLWSLIVNF 451
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDM 431
+ NV+ +T + P +++ V+NI S+ + + + Y+++KA + E L+
Sbjct: 135 ETNVIGQLAITSALFPLLLQDPNPHVVNIASSLAYFSAMGVGAYSSSKAALVSLHETLEE 194
Query: 432 E 434
E
Sbjct: 195 E 195
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 26.2 bits (55), Expect = 3.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 428 IETLRE-LIDVCLSSSVDSQQRTRYDRRCRPDIDNNALFSLHHF 300
I+TL E ++D C+S S+ YD DI N+ F + F
Sbjct: 305 IQTLLEKILDFCISPLQSSESDVEYDGATSSDILNSLKFLRNKF 348
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 202 EYFLDLPEWDKLIPTLIKLMW 264
E F EWDKL PT+I L+W
Sbjct: 339 ESFFFPTEWDKLKPTII-LLW 358
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,885
Number of Sequences: 5004
Number of extensions: 51510
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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