Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0928
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92830-10|CAB07363.1| 315|Caenorhabditis elegans Hypothetical p... 68 6e-12
AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily a... 67 8e-12
Z77652-8|CAB01114.1| 314|Caenorhabditis elegans Hypothetical pr... 67 1e-11
Z77652-3|CAB01115.1| 349|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein ... 64 8e-11
AC024791-27|AAM43788.1| 254|Caenorhabditis elegans Hypothetical... 57 1e-08
AC024791-25|AAK29888.4| 255|Caenorhabditis elegans Hypothetical... 54 8e-08
U39997-2|AAK68388.1| 378|Caenorhabditis elegans Dehydrogenases,... 51 6e-07
Z73899-12|CAA98083.1| 284|Caenorhabditis elegans Hypothetical p... 44 9e-05
Z73898-10|CAA98071.1| 284|Caenorhabditis elegans Hypothetical p... 44 9e-05
AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical... 40 0.001
AF022978-8|AAG24176.1| 279|Caenorhabditis elegans Hypothetical ... 40 0.001
Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical p... 40 0.001
Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical p... 40 0.001
Z83238-12|CAB05801.1| 279|Caenorhabditis elegans Hypothetical p... 40 0.002
Z81513-14|CAB04187.1| 279|Caenorhabditis elegans Hypothetical p... 40 0.002
U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,... 40 0.002
U23455-5|AAC46535.1| 305|Caenorhabditis elegans Hypothetical pr... 40 0.002
AF022981-7|AAG24204.1| 280|Caenorhabditis elegans Hypothetical ... 39 0.003
U41749-1|AAB52488.2| 248|Caenorhabditis elegans Dehydrogenases,... 38 0.004
AL031633-8|CAA21012.1| 296|Caenorhabditis elegans Hypothetical ... 38 0.006
AF016685-15|AAG24139.2| 321|Caenorhabditis elegans Hypothetical... 33 0.22
AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenase... 33 0.22
U21319-3|AAC46671.2| 265|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical pr... 29 2.7
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein. 29 3.6
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei... 29 3.6
AF000196-3|AAL11097.1| 199|Caenorhabditis elegans Hypothetical ... 29 3.6
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :... 29 3.6
U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,... 28 4.8
Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical pr... 27 8.3
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 27 8.3
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 27 8.3
AC024882-3|AAF60934.1| 340|Caenorhabditis elegans Seven tm rece... 27 8.3
>Z92830-10|CAB07363.1| 315|Caenorhabditis elegans Hypothetical
protein F11A5.12 protein.
Length = 315
Score = 67.7 bits (158), Expect = 6e-12
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
N + T ++ +LP+MV R+ G+++NIGS + ++ ++Y+ATK YV+ + L EY
Sbjct: 161 NTLPATLLSAGILPQMVSRKAGIIVNIGSFAGVVKLAEWSIYSATKKYVEWLTGCLRKEY 220
Query: 438 SKKGIVVQCILPGFVCSNMSG 500
S GI+ Q I P V + M+G
Sbjct: 221 SHHGIIFQAITPAMVATKMAG 241
Score = 44.4 bits (100), Expect = 7e-05
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEI-EKEYKVATKIIQADFSEDDKI-YENIEKEIAGLEIGTLVN 174
++ +VSR+ KL+ T ++I EK+ + + DF+ YE + ++ + +G L+N
Sbjct: 73 NVYIVSRTQSKLEQTKKDILEKQPDIEVRFATYDFTNPSVTDYEKLLSKLNEVSVGILIN 132
Query: 175 NVGVSYTYPE 204
NVG+ + YPE
Sbjct: 133 NVGMFFDYPE 142
>AF022973-4|AAC25798.1| 314|Caenorhabditis elegans Temporarily
assigned gene nameprotein 57 protein.
Length = 314
Score = 67.3 bits (157), Expect = 8e-12
Identities = 31/77 (40%), Positives = 49/77 (63%)
Frame = +3
Query: 264 VAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEYSK 443
V + +T +LP+M+ R+ G+++NIGSA+ I +VY+ATK Y++ F+ L EY
Sbjct: 166 VNILPLTAGILPQMMARKSGIIVNIGSAAGSIHMAKWSVYSATKKYIEWFTSILQKEYEN 225
Query: 444 KGIVVQCILPGFVCSNM 494
+GI+ Q I P V +NM
Sbjct: 226 EGIICQTITPLLVSTNM 242
Score = 37.5 bits (83), Expect = 0.008
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEIEKEYK-VATKIIQADFSEDD-KIYENIEKEIAGLEIGTLVN 174
+I L+SR+ KL T ++I +Y + + DF+ + Y+ + + ++IG L+N
Sbjct: 79 NIFLISRTKSKLVKTKKQILNKYSDIEVRYAICDFTRVSYEDYKRLLHSLNEVDIGILIN 138
Query: 175 NVGVSYTYPE 204
NVG+ + PE
Sbjct: 139 NVGMCFDNPE 148
>Z77652-8|CAB01114.1| 314|Caenorhabditis elegans Hypothetical
protein C06B3.4 protein.
Length = 314
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
N + T ++ +LP+MV R+ G+++NIGS + + +VY+ATK YV+ + L EY
Sbjct: 161 NTLPATLLSAGILPQMVPRKAGIIVNIGSVAGLATMAEWSVYSATKKYVEWITGCLQKEY 220
Query: 438 SKKGIVVQCILPGFVCSNMSG 500
+GI+ Q I P V + M+G
Sbjct: 221 GHQGIIFQAITPAMVATKMAG 241
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEI-EKEYKVATKIIQADFSEDD-KIYENIEKEIAGLEIGTLVN 174
++ +VSR+ KL+ T +EI E + + DF+ YE + ++ + IG L+N
Sbjct: 73 NVYIVSRTQSKLEHTKKEILEVHPDIEVRFATFDFTNPSVSDYEKLLSKLNEVSIGILIN 132
Query: 175 NVGVSYTYPE 204
NVG+ + YPE
Sbjct: 133 NVGMFFDYPE 142
>Z77652-3|CAB01115.1| 349|Caenorhabditis elegans Hypothetical
protein C06B3.5 protein.
Length = 349
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/81 (37%), Positives = 50/81 (61%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
N + VT ++ +LP+MV R+ G+++NIGS + +VY+A+K YV+ + L EY
Sbjct: 161 NTLPVTLLSAGILPQMVSRKTGIIVNIGSVAGAAKMAEWSVYSASKKYVEWLTGCLRKEY 220
Query: 438 SKKGIVVQCILPGFVCSNMSG 500
+GI++Q I P V + +SG
Sbjct: 221 EHQGIIIQAITPALVATKLSG 241
Score = 45.2 bits (102), Expect = 4e-05
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEIEKEYK-VATKIIQADFSEDD-KIYENIEKEIAGLEIGTLVN 174
+I +VSR+ KL+ T +EI ++Y V + DF+ Y+ + ++ + IG L+N
Sbjct: 73 NIYIVSRTQSKLEQTKKEIMEKYSNVEVRFATFDFTNPSISDYKKLLSQLNEVSIGMLIN 132
Query: 175 NVGVSYTYPE 204
NVG+ + YPE
Sbjct: 133 NVGMLFEYPE 142
>U23177-3|AAA64333.2| 316|Caenorhabditis elegans Lethal protein 767
protein.
Length = 316
Score = 64.1 bits (149), Expect = 8e-11
Identities = 33/87 (37%), Positives = 49/87 (56%)
Frame = +3
Query: 243 NSDQANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEG 422
N N + T ++ +LP+MV R+ GV++N+GS++ L VY+ATK YV +
Sbjct: 156 NITTINTLPPTLLSAGILPQMVARKAGVIVNVGSSAGANQMALWAVYSATKKYVSWLTAI 215
Query: 423 LDMEYSKKGIVVQCILPGFVCSNMSGI 503
L EY +GI VQ I P V + MS +
Sbjct: 216 LRKEYEHQGITVQTIAPMMVATKMSKV 242
Score = 48.4 bits (110), Expect = 4e-06
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Frame = +1
Query: 1 DIVLVSRSLDKLKATAEEIEKEYK-VATKIIQADFSED-DKIYENIEKEIAGLEIGTLVN 174
+++LVSR+ KL T +EI ++Y + + DF+ Y+++ + +EIG L+N
Sbjct: 73 NVLLVSRTQSKLDETKKEILEKYSSIEVRTAAFDFTNAAPSAYKDLLATLNQVEIGVLIN 132
Query: 175 NVGVSYTYPE 204
NVG+SY YP+
Sbjct: 133 NVGMSYEYPD 142
>AC024791-27|AAM43788.1| 254|Caenorhabditis elegans Hypothetical
protein Y47G6A.22 protein.
Length = 254
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/79 (32%), Positives = 47/79 (59%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
NV ++ ++TR LP ++ KG V+N+ S + P P +T Y +K+ VD+F++ L +E
Sbjct: 112 NVRSLIRLTRAALPHIITT-KGTVVNVSSINGPCPFPNVTYYCMSKSAVDQFTKCLALEM 170
Query: 438 SKKGIVVQCILPGFVCSNM 494
+ G+ V + PG +N+
Sbjct: 171 APNGVRVNAVCPGVTVTNL 189
>AC024791-25|AAK29888.4| 255|Caenorhabditis elegans Hypothetical
protein Y47G6A.21 protein.
Length = 255
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/79 (31%), Positives = 47/79 (59%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEY 437
NV ++ ++TR LP ++ KG V+N+ S + P +T Y +K+ VD+F++ L +E
Sbjct: 113 NVRSLIRLTRAALPHIITT-KGTVVNVSSINGPCPFAGVTYYCMSKSAVDQFTKCLALEM 171
Query: 438 SKKGIVVQCILPGFVCSNM 494
+ G+ V + PG + +N+
Sbjct: 172 APNGVRVNAVCPGVIVTNI 190
>U39997-2|AAK68388.1| 378|Caenorhabditis elegans Dehydrogenases,
short chain protein5 protein.
Length = 378
Score = 51.2 bits (117), Expect = 6e-07
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDM 431
+ N + + VLP M K G ++ + S+ + P P+L Y ATKA + E +D
Sbjct: 195 RVNGMGAAEFLSCVLPPMEKSGGGQIVVLSSSQGVRPIPMLAAYCATKALMTFLCESIDR 254
Query: 432 EYSKKGIVVQCILPGFVCSNMS 497
EYS I VQ ++P V + M+
Sbjct: 255 EYST--INVQTLIPALVATKMT 274
>Z73899-12|CAA98083.1| 284|Caenorhabditis elegans Hypothetical
protein ZK829.1 protein.
Length = 284
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 ANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTV--YAATKAYVDKFSEGLD 428
+N +V +T+ +P ++K KG ++N+ + S P ++++ YA KA +D+ S +
Sbjct: 122 SNFKSVLMLTQAAMPHLIKT-KGDIVNVSTFLSSGPIGVMSMPYYAVPKAALDQMSRSMA 180
Query: 429 MEYSKKGIVVQCILPGFVCSN 491
EY KG+ + + PG V ++
Sbjct: 181 HEYMLKGVRLNTVNPGLVSTS 201
>Z73898-10|CAA98071.1| 284|Caenorhabditis elegans Hypothetical
protein ZK829.1 protein.
Length = 284
Score = 44.0 bits (99), Expect = 9e-05
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +3
Query: 255 ANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTV--YAATKAYVDKFSEGLD 428
+N +V +T+ +P ++K KG ++N+ + S P ++++ YA KA +D+ S +
Sbjct: 122 SNFKSVLMLTQAAMPHLIKT-KGDIVNVSTFLSSGPIGVMSMPYYAVPKAALDQMSRSMA 180
Query: 429 MEYSKKGIVVQCILPGFVCSN 491
EY KG+ + + PG V ++
Sbjct: 181 HEYMLKGVRLNTVNPGLVSTS 201
>AF022978-10|AAG24180.2| 275|Caenorhabditis elegans Hypothetical
protein T01G6.10 protein.
Length = 275
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGSASS----IIPSPLLTVYAATKAYVDKFSE 419
Q N AV +M + +++ KG ++N+ S ++ + PSP YAA+KA +D+++
Sbjct: 117 QINFEAVIEMVKKTKNHLIE-SKGEIVNVSSVAAGPQALAPSPY---YAASKAALDQYTR 172
Query: 420 GLDMEYSKKGIVVQCILPGFVCSNMSG 500
+ ++ +G+ V + PG V S G
Sbjct: 173 CVALDLILQGVRVNSVSPGVVTSGFLG 199
>AF022978-8|AAG24176.1| 279|Caenorhabditis elegans Hypothetical
protein T01G6.1 protein.
Length = 279
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGS-ASSIIPSPLLTVYAATKAYVDKFSEGLD 428
Q N AV +M + +++ KG ++N+ S A+ + YAA KA +++++ +
Sbjct: 117 QINFQAVVEMVKKTKKYLIE-SKGEIVNVSSIAAGPQAVSMSPYYAAAKAALNQYTRCVA 175
Query: 429 MEYSKKGIVVQCILPGFVCSNMSG 500
++ K+G+ V + PG + +N G
Sbjct: 176 LDLIKQGVRVNSVSPGIIATNFMG 199
>Z75547-15|CAA99897.2| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKRE-KGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDME 434
NV + ++V V R+ KG ++NI S ++I P TVY A+KA +D + L E
Sbjct: 114 NVRGPILIAQLVARNFVDRQIKGSIVNISSQAAIRPLDNHTVYCASKAALDMVTRCLANE 173
Query: 435 YSKKGIVVQCILPGFVCSNM 494
+ I V + P V ++M
Sbjct: 174 LGSQNIRVNSVNPTVVMTDM 193
>Z75527-10|CAJ80819.1| 251|Caenorhabditis elegans Hypothetical
protein R11D1.11 protein.
Length = 251
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKRE-KGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDME 434
NV + ++V V R+ KG ++NI S ++I P TVY A+KA +D + L E
Sbjct: 114 NVRGPILIAQLVARNFVDRQIKGSIVNISSQAAIRPLDNHTVYCASKAALDMVTRCLANE 173
Query: 435 YSKKGIVVQCILPGFVCSNM 494
+ I V + P V ++M
Sbjct: 174 LGSQNIRVNSVNPTVVMTDM 193
>Z83238-12|CAB05801.1| 279|Caenorhabditis elegans Hypothetical
protein F26D2.15 protein.
Length = 279
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 243 NSDQANVVAVTKMTRIVLPEMVKREKGVVINIGS-ASSIIPSPLLTVYAATKAYVDKFSE 419
N+ Q N+ +V + + ++K KG +IN+ + A+ P+ T Y +KA +D+F+
Sbjct: 116 NTMQINMRSVVTLVQKAKEHLIK-SKGEIINVSAMAAGHHGDPIATFYGMSKAALDQFTR 174
Query: 420 GLDMEYSKKGIVVQCILPGF 479
+ + G+ V + PGF
Sbjct: 175 SSAISLIQHGVRVNSVSPGF 194
>Z81513-14|CAB04187.1| 279|Caenorhabditis elegans Hypothetical
protein F26D2.15 protein.
Length = 279
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +3
Query: 243 NSDQANVVAVTKMTRIVLPEMVKREKGVVINIGS-ASSIIPSPLLTVYAATKAYVDKFSE 419
N+ Q N+ +V + + ++K KG +IN+ + A+ P+ T Y +KA +D+F+
Sbjct: 116 NTMQINMRSVVTLVQKAKEHLIK-SKGEIINVSAMAAGHHGDPIATFYGMSKAALDQFTR 174
Query: 420 GLDMEYSKKGIVVQCILPGF 479
+ + G+ V + PGF
Sbjct: 175 SSAISLIQHGVRVNSVSPGF 194
>U42835-6|AAA83589.2| 816|Caenorhabditis elegans Dehydrogenases,
short chain protein27 protein.
Length = 816
Score = 39.5 bits (88), Expect = 0.002
Identities = 13/31 (41%), Positives = 25/31 (80%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGS 344
+ N+++ KMT ++LP MVK+++G+++NI S
Sbjct: 611 RVNLMSAVKMTEMILPNMVKKKRGIIVNISS 641
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +1
Query: 10 LVSRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKEIAGLEIGTLVNNVGVS 189
L+ R++DKL T +E+ +++ DF +DD + K++ L++G L+N G++
Sbjct: 534 LIGRNIDKLNNTKKELVEQHGCEVMCHVHDFEKDD--LSALPKDLETLDVGILINCAGIA 591
Query: 190 YTYPEYFLDLPE 225
+LPE
Sbjct: 592 PHIIGTLTELPE 603
>U23455-5|AAC46535.1| 305|Caenorhabditis elegans Hypothetical
protein F55E10.6 protein.
Length = 305
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/85 (27%), Positives = 43/85 (50%)
Frame = +3
Query: 243 NSDQANVVAVTKMTRIVLPEMVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEG 422
N+ Q N V + + L + VK+++G V+ I S S P P + Y +K V+ +++
Sbjct: 115 NTMQVNTFGVMRFIQ-GLKKFVKKQEGRVVIISSISGRTPRPTVGPYCVSKHAVEAYADV 173
Query: 423 LDMEYSKKGIVVQCILPGFVCSNMS 497
+ E + V + PGF +N++
Sbjct: 174 IRHELIDFNVSVHLLEPGFFTTNIT 198
>AF022981-7|AAG24204.1| 280|Caenorhabditis elegans Hypothetical
protein W03F9.9 protein.
Length = 280
Score = 38.7 bits (86), Expect = 0.003
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +3
Query: 252 QANVVAVTKMTRIVLPEMVKREKGVVINIGSASS-IIPSPLLTVYAATKAYVDKFSEGLD 428
Q N +V +MT+ + P + G ++N+ S + Y+A KA +D++S
Sbjct: 120 QLNFQSVVEMTQKIRPHLANTH-GEIVNVSSVGAGPAAENRFPYYSAAKAALDQYSRNTA 178
Query: 429 MEYSKKGIVVQCILPGFVCSNMS 497
++ GI V + PGFV + +
Sbjct: 179 IDLIPDGIRVNIVQPGFVATGFT 201
>U41749-1|AAB52488.2| 248|Caenorhabditis elegans Dehydrogenases,
short chain protein25 protein.
Length = 248
Score = 38.3 bits (85), Expect = 0.004
Identities = 21/57 (36%), Positives = 33/57 (57%)
Frame = +3
Query: 327 VINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEYSKKGIVVQCILPGFVCSNMS 497
+IN+ S + + T YAATKA V F++ E +KK + V +LPGF+ + M+
Sbjct: 138 IINVSSIVGKMGNFGQTNYAATKAGVIGFTKSAAKELAKKNVRVNAVLPGFIKTPMT 194
>AL031633-8|CAA21012.1| 296|Caenorhabditis elegans Hypothetical
protein Y39A1A.11 protein.
Length = 296
Score = 37.9 bits (84), Expect = 0.006
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +3
Query: 258 NVVAVTKMTRIVLPEMVKREKGV-VINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDME 434
N+ +V M++++ E V + ++N+ S I + T YAATK+ V F++ E
Sbjct: 162 NLNSVFLMSQMIARESVAAGSPLSIVNVSSIVGKIGNFGQTNYAATKSGVIGFTKSAARE 221
Query: 435 YSKKGIVVQCILPGFVCSNMS 497
+ K I V +LPGF+ + M+
Sbjct: 222 LATKNIRVNAVLPGFIRTPMT 242
>AF016685-15|AAG24139.2| 321|Caenorhabditis elegans Hypothetical
protein F59E11.2 protein.
Length = 321
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 303 MVKREKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEYSKKGIVVQCILPG 476
MV+R KG+++N+GS + Y A K + + S + +E + + V ++PG
Sbjct: 148 MVERRKGLIVNVGSLGG-LKYVFNVAYGAGKEALARMSTDMAVELNPYNVCVVTLIPG 204
>AC006733-4|AAF60486.1| 319|Caenorhabditis elegans Dehydrogenases,
short chain protein9 protein.
Length = 319
Score = 32.7 bits (71), Expect = 0.22
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 303 MVKREKGVVINIGSASSIIPSPLLTV-YAATKAYVDKFSEGLDMEYSKKGIVVQCILPGF 479
M R KG+++N+ S + L V Y K +D+ S +E KK + V I PG
Sbjct: 146 MTARNKGLIVNVSSGGGL--RYLFNVAYGVGKQALDRMSADTAVELRKKNVCVVSIWPGA 203
Query: 480 V 482
V
Sbjct: 204 V 204
>U21319-3|AAC46671.2| 265|Caenorhabditis elegans Hypothetical
protein C30G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 0.89
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 372 LTVYAATKAYVDKFSEGLDMEYSKKGIVVQCILPGFVCSNMSG 500
+T Y +K+ ++ F+ ME SK I+V PG+V ++M G
Sbjct: 184 MTAYRMSKSALNAFARQSFMELSKYHILVTSFCPGWVRTDMGG 226
>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 16 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKEIAGL 153
+ L ++K +E K YK K + DF+E + I + + GL
Sbjct: 719 NNELQQIKTEFDETMKNYKERVKTFERDFNESEAIKQRTISNLKGL 764
>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
protein H40L08.3 protein.
Length = 1026
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 16 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYENIEKEIAGL 153
+ L ++K +E K YK K + DF+E + I + + GL
Sbjct: 719 NNELQQIKTEFDETMKNYKERVKTFERDFNESEAIKQRTISNLKGL 764
>Z68270-1|CAA92566.2| 458|Caenorhabditis elegans Hypothetical
protein ZC410.2 protein.
Length = 458
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 458 TMYPTRFRVLEHVRYSSSSLFAPTAKVFVQSAIKARRQRXPGTLGYLPHAAFRGT 622
T P FRV S++ T VF+ + + ++ GT +L H AF+GT
Sbjct: 33 TTLPNGFRVATENTGGSTA----TIGVFIDAGSRYENEKNNGTAHFLEHMAFKGT 83
>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 16 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYE-NIEKEIAGLEIGTLVNNVGVSY 192
SR+++K+K + E ++KE K KI ++ ++DD I N+ A L + + VG Y
Sbjct: 1280 SRNIEKMKKSQENLDKE-KSEEKISESKKNQDDSIESPNLPGTPANLPVDEPLPPVGRLY 1338
>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 16 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYE-NIEKEIAGLEIGTLVNNVGVSY 192
SR+++K+K + E ++KE K KI ++ ++DD I N+ A L + + VG Y
Sbjct: 1280 SRNIEKMKKSQENLDKE-KSEEKISESKKNQDDSIESPNLPGTPANLPVDEPLPPVGRLY 1338
>AF000196-3|AAL11097.1| 199|Caenorhabditis elegans Hypothetical
protein B0041.8 protein.
Length = 199
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -3
Query: 452 DTLLRVLHIETLRELIDVCLS-SSVDSQQRTRYDRRCRPDIDNNALFS 312
DTL ++ +ET+ E+I S SSV+S R +R D N ++FS
Sbjct: 36 DTLRKLNDVETVGEIISTTPSTSSVESSGFRRNAKRKMDDDSNTSMFS 83
>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
animals transformedinto males protein 2, isoform a
protein.
Length = 1475
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 16 SRSLDKLKATAEEIEKEYKVATKIIQADFSEDDKIYE-NIEKEIAGLEIGTLVNNVGVSY 192
SR+++K+K + E ++KE K KI ++ ++DD I N+ A L + + VG Y
Sbjct: 1280 SRNIEKMKKSQENLDKE-KSEEKISESKKNQDDSIESPNLPGTPANLPVDEPLPPVGRLY 1338
>U41991-1|AAA83341.2| 1400|Caenorhabditis elegans Rna polymerase,
class iii (c) protein1 protein.
Length = 1400
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/54 (25%), Positives = 30/54 (55%)
Frame = +1
Query: 406 ISSRRVSIWSTRRRVSLYNVSYPVSCARTCPVFVELAIRAHGQGLRPIGDQSSS 567
++S+R+ + + V + ++SY ++ ++ CP I AHG+ + I S+S
Sbjct: 1145 LNSKRIRL--LQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTS 1196
>Z68341-1|CAA92764.1| 258|Caenorhabditis elegans Hypothetical
protein F01G4.2 protein.
Length = 258
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = +3
Query: 315 EKGVVINIGSASSIIPSPLLTVYAATKAYVDKFSEGLDMEYSKKGIVVQCILPGFV 482
++GVVIN S ++ + Y+A+K + + L +++ GI I PG +
Sbjct: 143 QRGVVINTASVAAFDGQTGQSAYSASKGAIVGMTLPLARDFAGDGIRFNTIAPGLM 198
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 394 RHTSISSRRVSIWSTRRRVSLYNVSYPVSCARTCP 498
R T + R+ + RRR+ N ++ V RTCP
Sbjct: 146 RRTKLDRRKAATMRERRRLRKVNEAFEVVKQRTCP 180
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 394 RHTSISSRRVSIWSTRRRVSLYNVSYPVSCARTCP 498
R T + R+ + RRR+ N ++ V RTCP
Sbjct: 146 RRTKLDRRKAATMRERRRLRKVNEAFEVVKQRTCP 180
>AC024882-3|AAF60934.1| 340|Caenorhabditis elegans Seven tm
receptor protein 155 protein.
Length = 340
Score = 27.5 bits (58), Expect = 8.3
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Frame = +3
Query: 318 KGVVINIGSASSIIPSPLLTVYAATKAY--VDKFSEGLDMEYSK-------KGIVVQCIL 470
K ++ N+G +S++ LL V+ TK Y V + EYSK K +V Q I+
Sbjct: 200 KDIMANLGLTTSMVIPILLIVFFGTKTYRKVKNLTTHGKSEYSKRLQMQLYKALVAQIII 259
Query: 471 P 473
P
Sbjct: 260 P 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,754,568
Number of Sequences: 27780
Number of extensions: 283709
Number of successful extensions: 965
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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