Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q77L56 Cluster: US8 glycoprotein gE; n=3; Mardivirus|Re...    32   6.8  
UniRef50_Q3W801 Cluster: Putative uncharacterized protein; n=2; ...    32   6.8  
UniRef50_Q6BKV4 Cluster: Similar to CA4658|IPF3092 Candida albic...    32   6.8  
UniRef50_Q0ITL9 Cluster: Os11g0240900 protein; n=10; Oryza sativ...    32   8.9  
UniRef50_Q8I5C0 Cluster: Putative uncharacterized protein; n=5; ...    32   8.9  

>UniRef50_Q77L56 Cluster: US8 glycoprotein gE; n=3; Mardivirus|Rep:
           US8 glycoprotein gE - Meleagrid herpesvirus 1 (Turkey
           herpesvirus)
          Length = 498

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 328 YNHTCTWPSENCRNTGLGILLFN*ISLFNEILLGPS 221
           Y  T TW S  C +T +G +  +  + F ++LLG S
Sbjct: 48  YTETWTWISSICNDTSMGYICLDRATCFQDLLLGTS 83


>UniRef50_Q3W801 Cluster: Putative uncharacterized protein; n=2;
           Frankia|Rep: Putative uncharacterized protein - Frankia
           sp. EAN1pec
          Length = 370

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = -1

Query: 219 GDPNILYKLSIAIDKSGTTPIGPLSSTNLLNI 124
           GDP+++  +S  + ++GTTP G LS  +LL I
Sbjct: 184 GDPSVVLTVSGRVGENGTTPPGLLSEADLLRI 215


>UniRef50_Q6BKV4 Cluster: Similar to CA4658|IPF3092 Candida albicans
           IPF3092; n=1; Debaryomyces hansenii|Rep: Similar to
           CA4658|IPF3092 Candida albicans IPF3092 - Debaryomyces
           hansenii (Yeast) (Torulaspora hansenii)
          Length = 588

 Score = 32.3 bits (70), Expect = 6.8
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -3

Query: 430 TVLERQFFCIXYSSLKFFL*WSHTVTMLLWYH*FYNHTCTWP-SENCRNTGLGILLFN*I 254
           TVL R        S+  +L  SHT   L+  H ++ H    P + +CR TG   LL+   
Sbjct: 496 TVLSRTSHLPHLDSIPRYLIMSHTTRPLMRLHDYFKHNLKPPTAPSCRCTGQEYLLYK-S 554

Query: 253 SLFNEILLGPSRR 215
            L +++  G +RR
Sbjct: 555 YLIHQLQAGLARR 567


>UniRef50_Q0ITL9 Cluster: Os11g0240900 protein; n=10; Oryza
           sativa|Rep: Os11g0240900 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 451

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 18/89 (20%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = -3

Query: 349 LLWYH*FYNHTCTWPSENCRNTGLGILLFN*ISLFNEILLGPSRRSKHFI*IIDSHRQVW 170
           L W +   NH   W S  C +T  G  + + +    +  L P+++ +  + +    + V+
Sbjct: 252 LQWLNLDNNHELLWDSSMCADTSRGAAIRDLVGKACKGPLSPAQQEQVLVELAKDWKLVY 311

Query: 169 HDSYRATKLDESIKYSP-YTIETKSNFVS 86
           H      KL + ++++P   +E  S  ++
Sbjct: 312 HCGMTPQKLPDLVEHNPLVAVEVLSKLIN 340


>UniRef50_Q8I5C0 Cluster: Putative uncharacterized protein; n=5;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 2013

 Score = 31.9 bits (69), Expect = 8.9
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = -1

Query: 324 ITRVHGRRRIVETXV*VYCFLIKFRYSMKFCLVPHGDPNILYKLSIAID-KSGTTPIGPL 148
           I +V+  + +V     ++CFL++ +Y+M  CLV + D  +L K +  +  KS     G L
Sbjct: 477 ILKVYDDKEVVGNDKYLFCFLLRKKYNMN-CLVSYDDNILLKKKTDQVKRKSNQINFGAL 535

Query: 147 SSTN 136
            + N
Sbjct: 536 ENKN 539


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,638,229
Number of Sequences: 1657284
Number of extensions: 7807049
Number of successful extensions: 15580
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15580
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)