Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   2.2  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   5.1  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    25   6.7  

>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 23/78 (29%), Positives = 32/78 (41%)
 Frame = -3

Query: 406 CIXYSSLKFFL*WSHTVTMLLWYH*FYNHTCTWPSENCRNTGLGILLFN*ISLFNEILLG 227
           C   S++  FL W H++T  + +   Y H     S    N    IL  N ++    +   
Sbjct: 262 CTLSSAIASFLAWEHSLTEAVQFGIDYVHGAITHSPPINNCSTNIL--NHMTRLRIVPFA 319

Query: 226 PSRRSKHFI*IIDSHRQV 173
           P     HFI  I SH QV
Sbjct: 320 PG----HFIEYILSHPQV 333


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 207 CLDRREGPSRISLNNEI*LKSNIPKPVFRQFSDGHVH 317
           CL+ +   +R +L  EI  K ++   ++R  S+GH+H
Sbjct: 706 CLELKSSFNRPNLFYEIKPKKDLYTELYRFISNGHLH 742


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 390 HLSFFYDGHTLSQCYCGITDSIITRV 313
           H +  Y G  + +C+  +  +IITR+
Sbjct: 154 HETSSYTGSNVEECFLSVVSTIITRI 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,163
Number of Sequences: 5004
Number of extensions: 36212
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)