Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0703 + 27398358-27398466,27398549-27398859,27399044-273991...    27   6.8  
11_06_0180 + 20962420-20962528,20962618-20962699,20962831-209629...    27   8.9  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    27   8.9  
01_05_0188 + 19055421-19056857                                         27   8.9  

>04_04_0703 +
           27398358-27398466,27398549-27398859,27399044-27399109,
           27399196-27399258,27399304-27399444,27399535-27399612,
           27399688-27399738,27399829-27399863,27399982-27400090,
           27400235-27400441
          Length = 389

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 360 LSQCYCGIT-DSIITRVHGRR 301
           L +CYCG+T  ++I+R  GRR
Sbjct: 351 LRKCYCGLTAHNVISRFDGRR 371


>11_06_0180 +
           20962420-20962528,20962618-20962699,20962831-20962948,
           20963024-20963062,20963181-20963343,20963706-20963921,
           20964039-20964116,20964244-20964500,20964544-20964575,
           20964815-20965197,20965262-20965831,20966250-20966343,
           20966365-20966541,20966761-20966963,20968244-20968301,
           20969126-20969381,20969553-20969789
          Length = 1023

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +1

Query: 268 AIYLNXCFDNSPTAMYTCDYRISD 339
           +IY+N  FD +P++  TC++ I +
Sbjct: 247 SIYMNWTFDWTPSSKATCEFTIEE 270


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = -1

Query: 225 PHGDPNILYKLSIAIDKSGTTPIGPLSSTNLLNIRLIRSKQNRTLYLLQLGCFSFDHMC 49
           P  D N L  LS A++ + +     ++ST + NIR +   + +T+    L  FS D MC
Sbjct: 774 PEDDNNALKSLS-AVELTQSQSRESMASTIMNNIRDLPDSELQTIRSQLLSDFSPDDMC 831


>01_05_0188 + 19055421-19056857
          Length = 478

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 123 RLIRSKQNRTLYLLQLGCF 67
           RL+R+++ R +YL++ GCF
Sbjct: 59  RLVRARRARGVYLVEYGCF 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,486,976
Number of Sequences: 37544
Number of extensions: 200849
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)