Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY082886-1|AAL92872.1| 1600|Homo sapiens eukaryotic translation ...    29   7.3  
AF281070-2|AAM69365.1| 1600|Homo sapiens eukaryotic translation ...    29   7.3  
AF104913-1|AAC82471.1| 1560|Homo sapiens eukaryotic protein synt...    29   7.3  
AB210013-1|BAE06095.1| 1624|Homo sapiens EIF4G1 variant protein ...    29   7.3  
AK021886-1|BAB13926.1|  279|Homo sapiens protein ( Homo sapiens ...    29   9.7  

>AY082886-1|AAL92872.1| 1600|Homo sapiens eukaryotic translation
           initiation factor 4GI protein.
          Length = 1600

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 267 FLIKFRYSMKFCLVPHGDPNILYKLSIAIDKSGTTPIGPLSSTNLLNI 124
           FL+ F++       P G P+I     + +DK+  TP+ PL  T L  I
Sbjct: 616 FLLGFQFIFASMQKPEGLPHIS---DVVLDKANKTPLRPLDPTRLQGI 660


>AF281070-2|AAM69365.1| 1600|Homo sapiens eukaryotic translation
           initiation factor 4G I protein.
          Length = 1600

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 267 FLIKFRYSMKFCLVPHGDPNILYKLSIAIDKSGTTPIGPLSSTNLLNI 124
           FL+ F++       P G P+I     + +DK+  TP+ PL  T L  I
Sbjct: 616 FLLGFQFIFASMQKPEGLPHIS---DVVLDKANKTPLRPLDPTRLQGI 660


>AF104913-1|AAC82471.1| 1560|Homo sapiens eukaryotic protein
           synthesis initiation factor protein.
          Length = 1560

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 267 FLIKFRYSMKFCLVPHGDPNILYKLSIAIDKSGTTPIGPLSSTNLLNI 124
           FL+ F++       P G P+I     + +DK+  TP+ PL  T L  I
Sbjct: 576 FLLGFQFIFASMQKPEGLPHIS---DVVLDKANKTPLRPLDPTRLQGI 620


>AB210013-1|BAE06095.1| 1624|Homo sapiens EIF4G1 variant protein
           protein.
          Length = 1624

 Score = 29.5 bits (63), Expect = 7.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 267 FLIKFRYSMKFCLVPHGDPNILYKLSIAIDKSGTTPIGPLSSTNLLNI 124
           FL+ F++       P G P+I     + +DK+  TP+ PL  T L  I
Sbjct: 641 FLLGFQFIFASMQKPEGLPHIS---DVVLDKANKTPLRPLDPTRLQGI 685


>AK021886-1|BAB13926.1|  279|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11824 fis, clone HEMBA1006492. ).
          Length = 279

 Score = 29.1 bits (62), Expect = 9.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 186 AIDKSGTTPIGPLSSTNLLNIRLIRSKQNRTLYLLQLGCFS 64
           A  +SG TP+G  ++   L+I ++  K+   +   QL CFS
Sbjct: 221 ASSESGLTPLGYAAAAGYLSIVVLLCKKRAKVLAAQLCCFS 261


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,525,782
Number of Sequences: 237096
Number of extensions: 1083725
Number of successful extensions: 5890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5890
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)