Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    28   3.4  
AF016452-5|AAB66017.2|  210|Caenorhabditis elegans Hypothetical ...    28   4.6  
Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
           protein 4 protein.
          Length = 2325

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 62  NEKQPNCNRYKVRFCFDRIRRIFNRFVELS--GPIGVVPDLSMAIDNLYKMFGSP 220
           NE  P   R +    FD    I    +E+   GP G+  D + AIDN+ K  G P
Sbjct: 655 NETMPAKVRVRWNEGFDGNEPIIKHAIEMRTMGPTGLWSDWTTAIDNIPKEEGKP 709


>AF016452-5|AAB66017.2|  210|Caenorhabditis elegans Hypothetical
           protein T05H4.11 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 193 IDSHRQVWHDSYRATKLDESIKYSPYTIETKSNFVSIT 80
           ++S RQ+ H   R     +S+++   T+E+ S FV  T
Sbjct: 14  VNSQRQISHVQKRELTKRKSVRFETQTVESTSEFVGKT 51


>Z81078-2|CAI79243.1|  148|Caenorhabditis elegans Hypothetical
           protein F36H2.4 protein.
          Length = 148

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 160 YRATKLDESIKYSPYTIETKSNFVSITIRLLFV 62
           YR + L   I  S Y IE   NFV + +  LF+
Sbjct: 85  YRISSLSVGITTSLYNIEEDLNFVIVDVSTLFI 117


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,459,920
Number of Sequences: 27780
Number of extensions: 198937
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)