Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0925
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ...    29   2.5  
At5g58250.1 68418.m07293 expressed protein                             28   3.2  
At5g44050.1 68418.m05390 MATE efflux family protein similar to r...    27   5.7  
At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...    27   5.7  
At2g26770.2 68415.m03211 plectin-related contains weak similarit...    27   5.7  
At2g26770.1 68415.m03210 plectin-related contains weak similarit...    27   5.7  
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s...    27   9.9  
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s...    27   9.9  

>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
           WD-40 repeats (PF0400);  similar to WD-40 repeat protein
           MSI4 (SP:O22607) [Arabidopsis thaliana]
          Length = 496

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 370 WSHTVTML-LWYH*FYNHTCTWPSENCR 290
           +S   T+L + Y  F NHT  WPS +CR
Sbjct: 58  YSQWKTLLPILYDSFVNHTLVWPSLSCR 85


>At5g58250.1 68418.m07293 expressed protein
          Length = 211

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 178 QVWHDSYRATKLDESIKYSPYTIE 107
           +V +DS+ AT LDE++  +P T+E
Sbjct: 156 RVLYDSFEATSLDEALASNPTTLE 179


>At5g44050.1 68418.m05390 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 491

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 421 LILSITHRLIIGXFLSILLY 480
           +I+S+T  LIIG  +S+L+Y
Sbjct: 343 MIISVTQSLIIGIIISVLIY 362


>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -3

Query: 253 SLFNEILLGPSRRSKHFI*IIDSHRQVWHDSYRATKLDESIKYSPYTIETKSNFVSITI 77
           S+F+++ +   RR KH I I+ +    + DS  + K ++    SP  + TK NF  + +
Sbjct: 80  SIFSKLGMQLHRRDKHPIGILKNAIYDYFDSNYSNKFEKFEDLSP-IVTTKQNFDDVLV 137


>At2g26770.2 68415.m03211 plectin-related contains weak similarity
           to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa
           intermediate filament-associated protein,
           IFAP300)[Cricetulus griseus]
          Length = 496

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 426 Y*KDSFFVFXILHLSFFYDGHTLSQCYCGITD 331
           Y  + F V  +LH    YDGH+LS    G  D
Sbjct: 333 YAPEPFDVGRVLHADIIYDGHSLSLSTVGKID 364


>At2g26770.1 68415.m03210 plectin-related contains weak similarity
           to Swiss-Prot:Q9JI55 plectin 1 (PLTN, PCN, 300-kDa
           intermediate filament-associated protein,
           IFAP300)[Cricetulus griseus]
          Length = 496

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 426 Y*KDSFFVFXILHLSFFYDGHTLSQCYCGITD 331
           Y  + F V  +LH    YDGH+LS    G  D
Sbjct: 333 YAPEPFDVGRVLHADIIYDGHSLSLSTVGKID 364


>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 195 LSIAIDKSGTTPIGP--LSSTNLLNIRLIRSKQNRTLYLLQLGC 70
           +S  I K G  PIG    S   +LN+R+ R+  + ++  +  GC
Sbjct: 251 VSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGC 294


>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 195 LSIAIDKSGTTPIGP--LSSTNLLNIRLIRSKQNRTLYLLQLGC 70
           +S  I K G  PIG    S   +LN+R+ R+  + ++  +  GC
Sbjct: 251 VSCYIRKDGLVPIGSGIASKLRILNLRMCRTVGDESIEAIAKGC 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,573,023
Number of Sequences: 28952
Number of extensions: 175087
Number of successful extensions: 373
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)