Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.17c |urg2||uracil phosphoribosyltransferase |Schizosacc...    29   0.61 
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo...    27   2.4  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    27   3.2  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    27   3.2  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.9  

>SPAC1002.17c |urg2||uracil phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -3

Query: 268 HKRSNTSKSFFIVIIPLF-GGRPSLSCFSIELTFNSIDINIYSYIGIF*RKFTQRPIVRF 92
           ++ + T KS  + I+P+   G   +S FS  L     D+ IY +IGIF  K T +PI  +
Sbjct: 42  YESTKTLKSPSVSIVPVLRSGMSMMSAFSKVLP----DVPIY-HIGIFREKSTLQPIEYY 96

Query: 91  N 89
           N
Sbjct: 97  N 97


>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
           es pombe|chr 2|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 83  FSIESDYWTLGKFTLKDSDI*IDINVNGIKSQLNGKTGQARSTSK*WYNDYKEAFT 250
           F  ES  WT      + +D+     V+G   Q  G  G    TSK W++ ++E  T
Sbjct: 306 FPWESLDWTFNGLWARKNDLPYLKAVHGKHWQPEGSLGYDEDTSKLWWDAFQEMQT 361


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 274 RTHKRSNTSKSFFIVIIPLFGGRPSLS 194
           R H   N+SK+F+ +I  + GG P  S
Sbjct: 642 RIHTEENSSKNFYEIISEIVGGFPYYS 668


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -2

Query: 149 LFIYRNLLT*IYPTSNSPIQLKIRTHVKDLKYNS 48
           +F++R++    Y T NSP   K+ + ++ L YN+
Sbjct: 96  VFLFRDMADFQYSTQNSPFVQKLDSTLRVLDYNA 129


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 368 SSELISQSGWRIYIVNSYGLH 430
           S E+ + +GWR Y+  ++G+H
Sbjct: 618 SVEVWATNGWRRYVHEAFGMH 638


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 7   PCPVLPDYYTTEIVLLYFKSL 69
           PC +LP Y    I L+ FK+L
Sbjct: 537 PCSILPSYIDLFISLMSFKNL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,826,222
Number of Sequences: 5004
Number of extensions: 58798
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)