Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0164 + 11364436-11367280,11367357-11367715                       29   4.4  
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834...    28   7.7  
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906...    28   7.7  
08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316     28   7.7  

>10_06_0164 + 11364436-11367280,11367357-11367715
          Length = 1067

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 152 YLFIYRNLLT*IYPTSNSPIQLKIRTHVKDLKYNSTISV 36
           YL++Y N  + + P S S  Q  +  H+ D  +N TI V
Sbjct: 541 YLYMYSNNFSGLLPNSLSNCQSLMELHLDDNFFNGTIPV 579


>12_02_0667 +
           21682386-21682944,21683042-21683201,21683419-21683467,
           21683570-21683683,21683794-21684294,21684594-21684980,
           21685074-21685172,21685380-21685478,21685817-21685890,
           21686387-21687023
          Length = 892

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 6/28 (21%), Positives = 18/28 (64%)
 Frame = +3

Query: 507 YIIPYFALIIYWIXVFVGKPWLWELTWV 590
           ++I Y A +++ + +++ + W  + TW+
Sbjct: 566 FVIVYIAFVVHGVCLYINRTWWKQTTWM 593


>11_03_0026 -
           9057965-9058234,9059410-9059522,9059612-9059802,
           9060606-9060720,9061781-9061907,9062915-9062990,
           9064247-9064365,9065430-9065593,9065666-9065779,
           9065966-9066065,9066276-9066340,9068175-9068253,
           9069513-9069659,9069904-9070161,9070657-9070852,
           9071179-9071402,9072531-9072554
          Length = 793

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 512 HTIFRSNYILDLXICGKAVVMGAYLGD 592
           H +F S + L + +  KAV+  AYLGD
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHAYLGD 229


>08_02_0954 + 22989780-22989883,22989980-22990160,22990218-22990316
          Length = 127

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 531 IIYWIXVFVGKPWLWELTWVITP*IFNATFVKKKMSXXRXIPFRA 665
           ++YWI V+     L+ + W++ P    A+F+ KK+   +   +RA
Sbjct: 32  VLYWIPVWYPVKVLF-VAWLVLPQFKGASFIYKKLVREQLRKYRA 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,028,473
Number of Sequences: 37544
Number of extensions: 376992
Number of successful extensions: 675
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)