Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)                       29   4.5  
SB_9163| Best HMM Match : XS (HMM E-Value=0.84)                        28   6.0  

>SB_57649| Best HMM Match : RPE65 (HMM E-Value=9)
          Length = 309

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 342 RPSN*NALLLHGRNRQGGGIYPRGLTKGPTP 250
           RP+  ++ L H  + Q G  Y  G T+GP+P
Sbjct: 28  RPTTIHSSLAHPHSAQDGTFYNFGATRGPSP 58


>SB_9163| Best HMM Match : XS (HMM E-Value=0.84)
          Length = 424

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   LPCPVLPDYYTTEIVLLYFKSLTCVR 81
           LP P+LPD     + + Y KSL C R
Sbjct: 346 LPGPILPDMVPLRVAMGYKKSLPCPR 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,567,395
Number of Sequences: 59808
Number of extensions: 415767
Number of successful extensions: 789
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)