Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic acetylch...    23   6.6  
Y17689-1|CAA76814.1|  111|Anopheles gambiae gSG2 protein protein.      23   8.7  
AJ130950-1|CAA10259.1|  114|Anopheles gambiae SG2 protein protein.     23   8.7  

>AY705403-1|AAU12512.1|  520|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 8 protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -3

Query: 289 WYLPARTHKRSNTSKSFFIVIIP 221
           WY    THK S   +  F+ I+P
Sbjct: 333 WYRSTSTHKMSPFVRRLFLEIMP 355


>Y17689-1|CAA76814.1|  111|Anopheles gambiae gSG2 protein protein.
          Length = 111

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 155 NVNGIKSQLNGKTGQARSTSK*WYNDYKEAFTGVGPF 265
           N+  +  Q  G +G     S   + ++ +AFT + PF
Sbjct: 65  NLGNLTQQFGGSSGAFPQFSIPSWTNFTDAFTSILPF 101


>AJ130950-1|CAA10259.1|  114|Anopheles gambiae SG2 protein protein.
          Length = 114

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +2

Query: 155 NVNGIKSQLNGKTGQARSTSK*WYNDYKEAFTGVGPF 265
           N+  +  Q  G +G     S   + ++ +AFT + PF
Sbjct: 65  NLGNLTQQFGGSSGAFPQFSIPSWTNFTDAFTSILPF 101


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,755
Number of Sequences: 2352
Number of extensions: 13964
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)