Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.21 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   4.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   4.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.1  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 143 IYRNLLT*IYPTSNSPIQLKIRTHV-KDLKYNSTISVV 33
           I RN L      +NSP Q K+R H+ K+ K ++T+ ++
Sbjct: 340 IVRNHLNSTCSVTNSPHQKKLRFHLAKERKASTTLGII 377


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 540 WIXVFVGKPWLW 575
           W+ VF G  W W
Sbjct: 164 WVGVFGGSAWSW 175


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 540 WIXVFVGKPWLW 575
           W+ VF G  W W
Sbjct: 164 WVGVFGGSAWSW 175


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 286 YLPARTHKRSNTSKSFFIVIIPLFGGRPS 200
           Y+  +      TS+ F  +++PL  GRP+
Sbjct: 303 YIQLKRPSDGATSEPFPFLMLPLGAGRPA 331


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 540 WIXVFVGKPWLW 575
           W+ VF G  W W
Sbjct: 164 WLSVFWGSAWQW 175


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 230 DYKEAFTGVGPFV 268
           DY + F G GP++
Sbjct: 21  DYSQLFAGFGPYI 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,057
Number of Sequences: 438
Number of extensions: 4646
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)