Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0923
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64060.1 68414.m07256 respiratory burst oxidase protein F (Rb...    30   1.2  
At5g60010.1 68418.m07525 ferric reductase-like transmembrane com...    28   6.5  
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    28   6.5  
At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    28   6.5  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    28   6.5  
At3g14850.2 68416.m01876 expressed protein                             27   8.5  
At3g14850.1 68416.m01877 expressed protein                             27   8.5  

>At1g64060.1 68414.m07256 respiratory burst oxidase protein F
           (RbohF) (RbohAp108) / NADPH oxidase identical to
           cytochrome b245 beta chain homolog RbohAp108
           [GI:2654868], respiratory burst oxidase protein F
           [gi:3242456], from Arabidopsis thaliana
          Length = 944

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 507 YIIPYFALIIYWIXVFVGKPWLWELTWV 590
           ++I Y  LI++ I ++  KPW    TW+
Sbjct: 575 FVIVYILLILHGIFLYFAKPWYVRTTWM 602


>At5g60010.1 68418.m07525 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 839

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 510 IIPYFALIIYWIXVFVGKPWLWELTWV 590
           ++ Y  LII+   + + KPW  + TW+
Sbjct: 505 VLAYILLIIHGYYLIIEKPWYQKTTWM 531


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 510 IIPYFALIIYWIXVFVGKPWLWELTWV 590
           +I Y  LII+   + + KPW  + TW+
Sbjct: 516 VIAYALLIIHGYILIIEKPWYQKTTWM 542


>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 507 YIIPYFALIIYWIXVFVGKPWLWELTWV 590
           ++I Y  LI++   V++ K W  + TW+
Sbjct: 487 FVIVYVLLIVHGYFVYLSKEWYHKTTWM 514


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 507 YIIPYFALIIYWIXVFVGKPWLWELTWV 590
           ++I Y  LI++   V++ K W  + TW+
Sbjct: 487 FVIVYVLLIVHGYFVYLSKEWYHKTTWM 514


>At3g14850.2 68416.m01876 expressed protein
          Length = 321

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 505 ESDTIFFNCLHWWTSS*P 452
           E DT+ FN  HWW+   P
Sbjct: 149 EMDTLIFNTWHWWSRRGP 166


>At3g14850.1 68416.m01877 expressed protein
          Length = 253

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 505 ESDTIFFNCLHWWTSS*P 452
           E DT+ FN  HWW+   P
Sbjct: 81  EMDTLIFNTWHWWSRRGP 98


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,577,386
Number of Sequences: 28952
Number of extensions: 304545
Number of successful extensions: 610
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)