Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0922
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      31   0.89 
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              30   2.1  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)                 29   3.6  
SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)                 28   6.3  
SB_5599| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  

>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = -1

Query: 567 IKKKRRNRTESTLTQAKVRICQSQRK 490
           IKK+RR+ +ES L  +K+ + QS+RK
Sbjct: 171 IKKRRRSHSESDLESSKLSLSQSERK 196


>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 407 SKLSLGKMVRTVFFNRYLVTCGIIWENLKREFFVFSSGN 291
           SKLSLG+ V   F   Y+  CG     LKRE  +    +
Sbjct: 10  SKLSLGQKVSAAFREWYIYACGYRQIGLKREDLIIEDSD 48


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 339 YST-SYQISVEENCTYHFTQRKFRKRSRDARTKMQIIYLCNSIPWSRN 479
           YST +Y++    N     TQ  +RK S   R +     LC S  W RN
Sbjct: 66  YSTMNYRLKNALNSKVTATQEAYRKNSHSPRKRQCRNRLCTSYNWIRN 113


>SB_50801| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-32)
          Length = 354

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 20/80 (25%), Positives = 35/80 (43%)
 Frame = +3

Query: 252 WLSTVAIAVSNFIVATTKNEKFSFQIFPNYSTSYQISVEENCTYHFTQRKFRKRSRDART 431
           W  ++A+ +   +V T     F++ I       Y   +   C Y     KFR    + +T
Sbjct: 240 WSPSMALEIQK-VVTTPSTPAFAYAIL------YCNGLINVCIYVLMNEKFRN---EVKT 289

Query: 432 KMQIIYLCNSIPWSRNLRKI 491
            ++  + CN++  S NLR I
Sbjct: 290 LLKCCFCCNAVAVSSNLRHI 309


>SB_10745| Best HMM Match : 7tm_1 (HMM E-Value=2.2e-31)
          Length = 354

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 339 YSTSYQISVEENCTYHFTQRKFRKRSRDARTKMQIIYLCNSIPWSRNLRKI 491
           Y+  Y   +   C Y     KFR    + +T ++  + CN++  S NLR+I
Sbjct: 262 YAILYFNGLINVCIYVLMNEKFRN---EVKTLLKCCFCCNAVAVSGNLRQI 309


>SB_5599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
 Frame = -1

Query: 576 MRSIKKKRRNRTESTLTQAKVRICQSQRKFFANSVTRVWNC-----IGRLFA-FWYARLV 415
           MR  KKKR  R+ +      + +CQ Q++ +AN +   WN      I RL A   Y  LV
Sbjct: 16  MRVWKKKRHLRSANQCKHQCLCLCQQQKQSYANEM-GAWNDTNPEEINRLIALILYCGLV 74

Query: 414 N 412
           N
Sbjct: 75  N 75


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,186,556
Number of Sequences: 59808
Number of extensions: 350317
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)