Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0922
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.     28   7.3  
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno...    28   7.3  

>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = -1

Query: 687 HYK*HKTDTLENSINNTI*CLY*NAMLLQNKLIIMLKMRSIKKKRRNRTESTLTQAKVRI 508
           +Y  H T +  N++NN I     +AMLL  ++ +  + +   KKRR+ + S+       +
Sbjct: 114 YYAVHDTKSSSNTLNNNIPRRS-SAMLLSPEMAMNSEQQKNSKKRRSSSRSSSNSRFATV 172

Query: 507 C 505
           C
Sbjct: 173 C 173


>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 343 PQVTKYLLKKTVRTILPKESLESVHETRVPKCK*STYAI 459
           P  TK +LKK V    PK+ L      R+P+ K S +A+
Sbjct: 658 PLTTKVVLKKEVFIEPPKQMLPDPIPARIPRPKISKWAV 696


>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
           abnormal morphology protein19 protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 343 PQVTKYLLKKTVRTILPKESLESVHETRVPKCK*STYAI 459
           P  TK +LKK V    PK+ L      R+P+ K S +A+
Sbjct: 658 PLTTKVVLKKEVFIEPPKQMLPDPIPARIPRPKISKWAV 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,068
Number of Sequences: 27780
Number of extensions: 275829
Number of successful extensions: 654
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)