Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0922
         (696 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 63  PRSVDISQLTNQSQILS*IRLER 131
           P +VD++QLT+ S+ L+ I++ R
Sbjct: 916 PDAVDLTQLTSVSEWLASIKMSR 938


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 78 CLRFLGTIGFDG*VRLSP 25
          C +FLG +GF G V++SP
Sbjct: 48 CEQFLGPVGFGG-VQVSP 64


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 595 TYYYVKNAFY*KEKEKPYRIDFNTSK 518
           T YYV + +Y  ++   Y+ID    K
Sbjct: 274 TPYYVMSLWYWIDRNSAYKIDQRIQK 299


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 625 VLKCHATAEQTYYYVKNA 572
           V KC AT E+TY   K A
Sbjct: 562 VTKCKATNEETYRGGKGA 579


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 625 VLKCHATAEQTYYYVKNA 572
           V KC AT E+TY   K A
Sbjct: 562 VTKCKATNEETYRGGKGA 579


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 625 VLKCHATAEQTYYYVKNA 572
           V KC AT E+TY   K A
Sbjct: 562 VTKCKATNEETYRGGKGA 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,958
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)