Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0922
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12810.1 68417.m02009 F-box family protein similar to F-box p...    31   0.73 
At1g20240.1 68414.m02528 hypothetical protein                          28   5.1  
At1g20940.1 68414.m02622 F-box family protein contains Pfam:PF00...    28   6.8  
At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy...    27   9.0  
At3g04930.1 68416.m00535 expressed protein  contains Pfam profil...    27   9.0  

>At4g12810.1 68417.m02009 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 382

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 100 DWLVNWLMSTLLGYHRL--*RLSKVKPVPNSRC 8
           D+LV W +S+L GYH+    R    KP+ N RC
Sbjct: 168 DYLVVWNISSLFGYHKKGDDRWKVFKPLENERC 200


>At1g20240.1 68414.m02528 hypothetical protein
          Length = 566

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +3

Query: 294 ATTKNE---KFSFQIFPNYSTSYQISVEENCTYHFTQRKFRKRSR-DARTKMQIIYLCNS 461
           A T+N    +F         T Y+  + +  ++  ++      S+ D  T M+ +YL N+
Sbjct: 6   AVTRNRTTMRFKIVCILETQTLYRFEISDGYSWRLSETTITPSSKSDLTTLMKPVYLDNT 65

Query: 462 IPWSRN 479
           + W RN
Sbjct: 66  LHWLRN 71


>At1g20940.1 68414.m02622 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 414

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 YQISVEENCTYHFTQRKFRKRSR-DARTKMQIIYLCNSIPWSRN 479
           Y   + E  ++  ++      S+ D  T+M+ +YL N++ W RN
Sbjct: 198 YGFEINEGDSWRLSETSITTSSKSDLTTRMKPVYLDNTLHWLRN 241


>At3g13730.1 68416.m01733 cytochrome P450, putative similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; identical to CYP90D
           (GI:14971017) [Arabidopsis thaliana]
          Length = 491

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 377 YVPFYPKKV*KAFTRRAYQNAN-NLPMQFHTLVTEFAKN 490
           +VPFYPK V +   + +    N +L  +FH LV  F K+
Sbjct: 120 FVPFYPKTVRELMGKSSILLINGSLHRRFHGLVGSFLKS 158


>At3g04930.1 68416.m00535 expressed protein  contains Pfam profile:
           PF04504 protein of unknown function, DUF573
          Length = 456

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -1

Query: 600 NKLIIMLKMRSIKKKRRNRTESTLTQAKVRICQSQRKFFANSVTR-VWNCIGRLFAF 433
           NK  ++ K+R +KKK RN   S ++  K    +S        ++R +WN  G++  F
Sbjct: 187 NKNQLVEKLRRLKKKYRN-VMSKISSGKEVFFKSPHDQSTFEISRKIWNQTGKIIGF 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,460,167
Number of Sequences: 28952
Number of extensions: 245210
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)