Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0921
         (688 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UBU6 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_A2DCD3 Cluster: Polymorphic outer membrane protein, put...    33   4.9  
UniRef50_Q9MJ73 Cluster: Physarum polycephalum mitochondrial DNA...    33   6.5  
UniRef50_A0D312 Cluster: Chromosome undetermined scaffold_36, wh...    33   8.6  

>UniRef50_Q4UBU6 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1764

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +3

Query: 468 LISFRFFFFNPFHGQAVEDRGLRFL*TNRFSKHLKFIMNFKINLIFFREILNECDDKHFI 647
           L SF  F++N    +    + +R +  N+F +  KF  ++KI++ F++  L     +   
Sbjct: 180 LESFTNFYYNSLQKEEQLYKNIRIMKINKFFEIWKFNSHYKISIHFYQYKLKSNTFQFIK 239

Query: 648 NYKSAPIILK 677
           NYK+  I LK
Sbjct: 240 NYKNIRIKLK 249


>UniRef50_A2DCD3 Cluster: Polymorphic outer membrane protein,
           putative; n=1; Trichomonas vaginalis G3|Rep: Polymorphic
           outer membrane protein, putative - Trichomonas vaginalis
           G3
          Length = 712

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 218 YNKNIRSVNLPRTTTHVEGLFFVIPIIIEDKIVMNKNYFY 337
           +N++I S+N  +TTTH E  FF   I+I       KNY +
Sbjct: 48  FNRDI-SINTGKTTTHREYTFFKCSIVISGTTTFEKNYAF 86


>UniRef50_Q9MJ73 Cluster: Physarum polycephalum mitochondrial DNA,
           complete genome; n=2; Physarum polycephalum|Rep:
           Physarum polycephalum mitochondrial DNA, complete genome
           - Physarum polycephalum (Slime mold)
          Length = 543

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 237 LRMFLLYYDGCYMQFYFRKVCRGIQVLFQFILFYDSFHY 121
           L + +LYY+ CY   Y+  +   I +L  FIL+  S+ Y
Sbjct: 328 LGILILYYNFCYSMSYYNCMIITIPLLLSFILYEHSYQY 366


>UniRef50_A0D312 Cluster: Chromosome undetermined scaffold_36, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_36,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 525

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 18/66 (27%), Positives = 35/66 (53%)
 Frame = +3

Query: 456 ALQSLISFRFFFFNPFHGQAVEDRGLRFL*TNRFSKHLKFIMNFKINLIFFREILNECDD 635
           ++   ++FR F F     QA+E+  L+F+ ++  S  L   +  KI  IFF++I    + 
Sbjct: 293 SIHKYLNFRLFNFTIID-QAIENVKLKFISSDHISVPLSIFVLEKIKCIFFQKIFLMFES 351

Query: 636 KHFINY 653
           + F+ +
Sbjct: 352 QQFLKF 357


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,679,766
Number of Sequences: 1657284
Number of extensions: 11180065
Number of successful extensions: 22290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22241
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)