Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0921
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0230 + 21103524-21103746,21105393-21105661,21105845-211060...    30   1.5  
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403...    29   3.5  
02_03_0349 + 18010414-18014283                                         29   4.6  

>02_04_0230 +
           21103524-21103746,21105393-21105661,21105845-21106009,
           21106081-21106203,21107261-21107473
          Length = 330

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/65 (24%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = -3

Query: 668 YGCRFVINKVFIITFI*NFPEKNKVNFKVHNEFKVLRKSVCLQKSQTSIFDGLSV-KWIK 492
           +G + V + + + T+  +   +NK+   ++N  + L+K+V L K++  +FD ++  +W++
Sbjct: 129 FGEKIVDHMILVFTYG-DLVGENKLKSMLNNAPEYLQKTVELCKNRVVLFDNMTKDRWLQ 187

Query: 491 KKESE 477
           +K+ E
Sbjct: 188 EKQLE 192


>01_01_0548 -
           4033077-4033349,4034007-4034261,4034362-4034533,
           4034616-4034839,4035168-4035332,4035591-4035881,
           4035971-4036303,4036391-4036485,4036570-4036689,
           4036778-4036934,4037176-4037279,4037383-4037543,
           4037636-4037952,4038655-4038936,4039020-4039321,
           4039453-4039543,4040227-4040280,4040367-4040684,
           4041008-4041092,4041178-4041266,4041474-4041594,
           4042136-4042431
          Length = 1434

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
 Frame = +3

Query: 393 SKLTWQPCIVPSN---YVYRSVK*ALQSLISFRFFFFNPFHGQAVEDRGLRFL*TNRFSK 563
           S   WQ  ++  N   YV++ ++  L +LI+   FF +  H  +V+D G+ +L    F+ 
Sbjct: 524 SNFQWQHLLMKRNSFIYVFKFIQLLLVALITMTVFFRSTMHRDSVDD-GIIYLGALYFAI 582

Query: 564 HLKFIMNF-KINLIFFR-EILNECDDKHF 644
            +     F +++L+  +  IL +  D HF
Sbjct: 583 VMILFNGFTEVSLLVTKLPILYKHRDLHF 611


>02_03_0349 + 18010414-18014283
          Length = 1289

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -3

Query: 602 NKVNFKVHNEFKVLRKSVCLQKSQT---SIFDGLSVKWIKKKES 480
           NKVNFK   EFK LR++  L  S          + V+W+ K+E+
Sbjct: 163 NKVNFKQEVEFKNLRETSSLPHSLVLGREEESNIVVQWLTKREN 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,184
Number of Sequences: 37544
Number of extensions: 257248
Number of successful extensions: 407
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)