Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0921
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT...    30   1.3  
At1g29590.1 68414.m03618 eukaryotic translation initiation facto...    29   2.9  
At1g29550.1 68414.m03614 eukaryotic translation initiation facto...    29   2.9  

>At3g22740.1 68416.m02868 homocysteine S-methyltransferase 3 (HMT-3)
           identical to homocysteine S-methyltransferase HMT-3
           [Arabidopsis thaliana] GI:9966515; similar to
           homocysteine S-methyltransferase AtHMT-2 (GI:6685163)
           [Arabidopsis thaliana]; similar to selenocysteine
           methyltransferase GB:P56707 from [Astragalus bisulcatus]
          Length = 347

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 569 KVLRKSVCLQKSQTSIFDGLSVKWIKKK-ESETD 471
           ++ RK + +  +   ++DGL+ KWIK + ESE D
Sbjct: 266 QMTRKPIVVYPNSGEVYDGLNKKWIKSEGESEED 299


>At1g29590.1 68414.m03618 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 285

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 611 PEKNKVNFKVHNEFKVLRKSVCLQKSQTSIFDGLSVK 501
           P K K N+       V++KS C Q S T  FD  S K
Sbjct: 90  PSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSK 126


>At1g29550.1 68414.m03614 eukaryotic translation initiation factor
           4E, putative / eIF-4E, putative / eIF4E, putative / mRNA
           cap-binding protein, putative similar to SP|O23252
           Eukaryotic translation initiation factor 4E (eIF-4E)
           (eIF4E) (mRNA cap-binding protein) (eIF-4F 25 kDa
           subunit) (eIF-4F P26 subunit) {Arabidopsis thaliana};
           contains Pfam profile PF01652: Eukaryotic initiation
           factor 4E
          Length = 240

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 611 PEKNKVNFKVHNEFKVLRKSVCLQKSQTSIFDGLSVK 501
           P K K N+       V++KS C Q S T  FD  S K
Sbjct: 45  PSKEKKNYASKKSTTVIQKSHCFQNSWTFWFDNPSSK 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,036,168
Number of Sequences: 28952
Number of extensions: 245914
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)