Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0920
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   2.3  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.3  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    24   7.0  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    24   9.3  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    24   9.3  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.3  

>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 381  GSGSAGRPAPGCWPANSPRT 322
            GS S+G PAP   P N P T
Sbjct: 1026 GSSSSGVPAPNLTPVNVPPT 1045


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = +1

Query: 64  IAKMWQNRIGLSSGNTHCMYYFFYKIN-------SVXVTVSFVLKELLDTPRNSNTEVTL 222
           I  MW+N++GL  G+   +     ++N            + FV+++ L      N   T+
Sbjct: 124 IVNMWENQVGLYQGSNMALLKTVLEVNLQLFHNKKERCLLQFVIRDFLGNTSMENLADTI 183

Query: 223 PSD 231
            +D
Sbjct: 184 MTD 186


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 336 NSPRTHSRFSLMTRKPRCRL 277
           N P  H   SL+   P CRL
Sbjct: 22  NKPNVHPSMSLLKALPECRL 41


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 296 GSRGAVCSALLFCSVDALV 240
           GS+G  C++L FC +  L+
Sbjct: 83  GSKGVSCNSLAFCCLVTLI 101


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 70  KMWQNRIGLSSGNTHCMYYFFYKINSVXVTVSFVLKELLDTP 195
           +MW   IGL           F+ + +  VT+S ++ ELL  P
Sbjct: 93  RMWT--IGLIYSTVGAAVNMFFSLRNPTVTLSVLISELLAYP 132


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 95  KPIRFCHILAINCLYMESSL-YQPDLLSGSS 6
           KPI  C  L+I  +YM+S   Y   + +G +
Sbjct: 886 KPIESCFSLSIQSVYMQSQFKYNNSIRAGET 916


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,056
Number of Sequences: 5004
Number of extensions: 27467
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)