Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0920
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342...    31   0.23 
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   2.2  
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935...    27   3.8  
04_01_0263 - 3532481-3532656,3532710-3532719,3532754-3532785,353...    26   8.7  

>09_06_0245 -
           21833622-21833901,21833988-21834059,21834152-21834231,
           21834366-21835109,21835212-21835547
          Length = 503

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = -2

Query: 138 FIKEIVHTMCVSAAQTNSVLPHFSNKLSLYGVV 40
           F++E+++  C+SAA+ NS       +L+ +GVV
Sbjct: 110 FLQELLYAKCISAAEYNSTKSPLVQRLAAFGVV 142


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 319  LPVQ-LDDPEAEVPFVQHYYFVVSMPSSITCLREE 218
            LPVQ L   E  +PFV  +Y V  + + ITC  EE
Sbjct: 1724 LPVQFLMSTEFFIPFVHLFYVVCVVQALITCYGEE 1758


>04_04_1228 +
           31888350-31892228,31892568-31893298,31893511-31893586,
           31894089-31894164,31894571-31894656,31895414-31895482,
           31895579-31895588,31895711-31896207
          Length = 1807

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -2

Query: 177 F*NK*NCDXH*VYFIKEIVHTMCVSAAQTNSVLPHFSNKLSL 52
           F  K   D H  Y I +++H +    A    V  H+SN  S+
Sbjct: 606 FFKKDETDGHPCYIIHDLLHNLAAKVASRECVSLHYSNVRSV 647


>04_01_0263 -
           3532481-3532656,3532710-3532719,3532754-3532785,
           3533237-3533348,3533586-3533649,3533778-3533843,
           3533946-3534073,3534205-3534342,3534427-3534539,
           3534611-3534776,3535045-3535107,3535197-3535304,
           3535408-3535524,3535620-3535785,3535942-3536039,
           3536136-3536233,3536378-3536514,3536654-3536878,
           3536971-3537176,3537286-3537525
          Length = 820

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 331 PAHALPVQLDDPEAEVP 281
           PA+ +P++ DD E+EVP
Sbjct: 18  PANVVPIKADDVESEVP 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,244
Number of Sequences: 37544
Number of extensions: 179095
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)