Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0920
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)                   49   1e-06
SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14)                  27   5.2  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.2  
SB_35715| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.8  
SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_40338| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_14908| Best HMM Match : HCaRG (HMM E-Value=7.1e-28)                 26   9.0  
SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  
SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)                    26   9.0  
SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)                     26   9.0  

>SB_39695| Best HMM Match : Pecanex_C (HMM E-Value=0)
          Length = 1048

 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 22/28 (78%), Positives = 24/28 (85%)
 Frame = +2

Query: 245 GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
           G   YKIIMLNKR+L FRVIK+NRECVR
Sbjct: 698 GADEYKIIMLNKRYLSFRVIKVNRECVR 725



 Score = 31.5 bits (68), Expect = 0.24
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = +3

Query: 213 SYSSLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
           S  +LRHV D+G D  K                        W    QEL++LRNRN
Sbjct: 687 SLLALRHVFDDGADEYKIIMLNKRYLSFRVIKVNRECVRGLWAGQLQELIFLRNRN 742


>SB_45648| Best HMM Match : WD40 (HMM E-Value=2.4e-14)
          Length = 316

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 348 CWPANSPRTHSRFSLMTRKPRC 283
           CW  + PRT     ++ R+P C
Sbjct: 251 CWRTSKPRTTFALDILVREPEC 272


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 298 PEAEVPFVQHYYFVVSMPSSITCLREE 218
           PE+   FV+H  F+  M S IT L  E
Sbjct: 319 PESVEDFVEHLVFLARMASDITSLERE 345


>SB_35715| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 185 WIRPVTVTQKLLFPQTRDGRGHRHYKIIMLNK 280
           W R + V+ ++L P T+DG  H    +I   K
Sbjct: 21  WYRGILVSFQILSPLTKDGNSHYFSLLITTQK 52


>SB_47117| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 869

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 88  IGLSSGNTHCMYYFFYKIN 144
           IGLS  +TH M YF Y ++
Sbjct: 570 IGLSETSTHVMQYFMYMLD 588


>SB_40338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 106 NTHCMYYFFYKINSVXVTVSFVLKELLDTPRNSNTEVTLPSDT*WTRAS 252
           N HC+ Y F       +T++ ++   ++  R  +T   LPS T W ++S
Sbjct: 59  NWHCVVYHFPLFCFPFITITNLVVISIELYRRYSTRFELPSAT-WRKSS 106


>SB_14908| Best HMM Match : HCaRG (HMM E-Value=7.1e-28)
          Length = 171

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  LSSGNTHCMYYFFYKINSVXVTVSFVLKELLDTPRNS 204
           LS+G TH       K + +   V++VLKE+ D  + +
Sbjct: 129 LSNGETHTFEVPVTKFHQLRYNVAYVLKEMEDVEKKN 165


>SB_44890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 70  KMWQNRIGLSSGNTHCMYYFFYKINSVXVTVSF 168
           K +QN++ L+S      + FF KIN + V++SF
Sbjct: 364 KFFQNKVWLTSEVYGDGFSFFLKINLLRVSLSF 396


>SB_43817| Best HMM Match : WD40 (HMM E-Value=1e-13)
          Length = 822

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 122 YIQCVFPLLKPIRFCHILAINCLYMESSLYQPDL 21
           Y+   +  LK IR C  + +  +Y    +YQP +
Sbjct: 132 YLNRTYSYLKTIRLCANMFVKGVYTSDMVYQPGI 165


>SB_26213| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 172

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 357 APGCWPANSPRTHSRFSLMTRKP 289
           A G  PA SPRTH+  S+   +P
Sbjct: 79  AEGAAPAPSPRTHAAHSMTAAEP 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,741,883
Number of Sequences: 59808
Number of extensions: 215326
Number of successful extensions: 392
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)