Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0920
         (382 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.         43   2e-04
M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein ( D.me...    43   2e-04
AL009195-1|CAA15708.1| 3345|Drosophila melanogaster EG:30B8.4,FB...    43   2e-04
AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB ...    43   2e-04
AY089531-1|AAL90269.1|  617|Drosophila melanogaster LD02310p pro...    27   6.2  
AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA...    27   6.2  
AE014296-1634|AAF50284.1|  617|Drosophila melanogaster CG4080-PA...    27   6.2  

>M74329-1|AAA28747.1| 2483|Drosophila melanogaster pcx protein.
          Length = 2483

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 245  GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
            G   Y+II L KR L FRVIKLNRECVR
Sbjct: 1724 GSDEYRIIRLTKRCLSFRVIKLNRECVR 1751



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 222  SLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
            +LRHVM++G D  +                        W    QEL+YLRNRN
Sbjct: 1716 ALRHVMEDGSDEYRIIRLTKRCLSFRVIKLNRECVRGLWAGQQQELIYLRNRN 1768


>M25662-1|AAA28749.1| 1938|Drosophila melanogaster protein (
            D.melanogaster pecanexgene, exons 1 (partial) and 2. ).
          Length = 1938

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 245  GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
            G   Y+II L KR L FRVIKLNRECVR
Sbjct: 1179 GSDEYRIIRLTKRCLSFRVIKLNRECVR 1206



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 222  SLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
            +LRHVM++G D  +                        W    QEL+YLRNRN
Sbjct: 1171 ALRHVMEDGSDEYRIIRLTKRCLSFRVIKLNRECVRGLWAGQQQELIYLRNRN 1223


>AL009195-1|CAA15708.1| 3345|Drosophila melanogaster
            EG:30B8.4,FBgn0003048;pcx protein.
          Length = 3345

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 245  GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
            G   Y+II L KR L FRVIKLNRECVR
Sbjct: 2587 GSDEYRIIRLTKRCLSFRVIKLNRECVR 2614



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 222  SLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
            +LRHVM++G D  +                        W    QEL+YLRNRN
Sbjct: 2579 ALRHVMEDGSDEYRIIRLTKRCLSFRVIKLNRECVRGLWAGQQQELIYLRNRN 2631


>AE014298-365|AAF45756.2| 3433|Drosophila melanogaster CG3443-PB
            protein.
          Length = 3433

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 245  GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
            G   Y+II L KR L FRVIKLNRECVR
Sbjct: 2675 GSDEYRIIRLTKRCLSFRVIKLNRECVR 2702



 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +3

Query: 222  SLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
            +LRHVM++G D  +                        W    QEL+YLRNRN
Sbjct: 2667 ALRHVMEDGSDEYRIIRLTKRCLSFRVIKLNRECVRGLWAGQQQELIYLRNRN 2719


>AY089531-1|AAL90269.1|  617|Drosophila melanogaster LD02310p
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 QTRDGRGHRHYKIIMLNKRHLGFRVIKLNREC 322
           QT DG GH+ ++ +  + + LG   +  N EC
Sbjct: 300 QTEDGHGHQRHQQMQQSGQQLGQVAVAANIEC 331


>AE014296-3356|AAF51592.1| 2284|Drosophila melanogaster CG5847-PA
           protein.
          Length = 2284

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 366 GRPAPGCWPANS-PRTHSRFSLMTRKPRC 283
           G   P C PA   P+T  R S+ T++PRC
Sbjct: 470 GSDDPECQPATYVPQTTRRPSITTKRPRC 498


>AE014296-1634|AAF50284.1|  617|Drosophila melanogaster CG4080-PA
           protein.
          Length = 617

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 227 QTRDGRGHRHYKIIMLNKRHLGFRVIKLNREC 322
           QT DG GH+ ++ +  + + LG   +  N EC
Sbjct: 300 QTEDGHGHQRHQQMQQSGQQLGQVAVAANIEC 331


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,954,999
Number of Sequences: 53049
Number of extensions: 315916
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1024276155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)