Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0920
(382 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical... 47 5e-06
AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical ... 28 2.0
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 27 4.5
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 27 4.5
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 27 4.5
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 27 6.0
Z81047-7|CAB02834.1| 297|Caenorhabditis elegans Hypothetical pr... 27 6.0
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr... 27 6.0
AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-couple... 26 7.9
AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical... 26 7.9
>AF067608-13|AAK95862.1| 1634|Caenorhabditis elegans Hypothetical
protein B0511.12 protein.
Length = 1634
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/28 (75%), Positives = 22/28 (78%)
Frame = +2
Query: 245 GHRHYKIIMLNKRHLGFRVIKLNRECVR 328
G YKIIMLN+ HL RVIKLNRECVR
Sbjct: 1140 GQDDYKIIMLNQMHLNMRVIKLNRECVR 1167
Score = 30.7 bits (66), Expect = 0.37
Identities = 17/56 (30%), Positives = 22/56 (39%)
Frame = +3
Query: 213 SYSSLRHVMDEGIDTTK**XXXXXXXXXXXXXXXXXXXXXXWPASSQELVYLRNRN 380
S +LRH+ D+G D K W QEL++LRNRN
Sbjct: 1129 SLLALRHIYDDGQDDYKIIMLNQMHLNMRVIKLNRECVRAFWAGQQQELIFLRNRN 1184
>AL110495-2|CAB60410.1| 203|Caenorhabditis elegans Hypothetical
protein Y60A9.3 protein.
Length = 203
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 212 KLLFPQTRDGRGHRHYKIIMLNK 280
+L FPQT+ R HR+YK ++ NK
Sbjct: 117 ELRFPQTK--RNHRNYKTVLCNK 137
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 154 VTVSFVLKELLDTPRNSNTEVTLPSDT*WTRASTLQNNNA 273
V +F++KE+LD + + E T+ +D A T N+A
Sbjct: 426 VNCTFLMKEMLDLEKGDDGESTIRADRSIINARTRSGNSA 465
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 154 VTVSFVLKELLDTPRNSNTEVTLPSDT*WTRASTLQNNNA 273
V +F++KE+LD + + E T+ +D A T N+A
Sbjct: 426 VNCTFLMKEMLDLEKGDDGESTIRADRSIINARTRSGNSA 465
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +1
Query: 154 VTVSFVLKELLDTPRNSNTEVTLPSDT*WTRASTLQNNNA 273
V +F++KE+LD + + E T+ +D A T N+A
Sbjct: 426 VNCTFLMKEMLDLEKGDDGESTIRADRSIINARTRSGNSA 465
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 26.6 bits (56), Expect = 6.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 129 EIVHTMCVSAAQTNSVLPHFSNKLSLYGVVF 37
+I ++ CVS +TN ++ FS KL + + F
Sbjct: 52 DICYSFCVSCMKTNFLVSQFSKKLIVKNLSF 82
>Z81047-7|CAB02834.1| 297|Caenorhabditis elegans Hypothetical
protein C41G6.9 protein.
Length = 297
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 268 YYFVVSMPSSITCLREE*LLCYCYGAY 188
Y +V PS + C R L +C GA+
Sbjct: 42 YLIIVKTPSHMKCARNSMLCLHCVGAF 68
>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
protein F28B4.3 protein.
Length = 2229
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 73 MWQNRIGLSSGNTHCMYYFFYKINSVXVTVSFVLKELLDTPRNSNTEVTLPS 228
++++++ LS +HC YK +V VT V+ ++ T N +VT P+
Sbjct: 608 LFRSQLALSGDYSHCANQNIYKSVAVDVTADQVV--VVATGSNLKLQVTTPT 657
>AY825249-1|AAX24101.1| 728|Caenorhabditis elegans sodium-coupled
neutral amino acidtransporter protein.
Length = 728
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 197 VTVTQKLLFPQTRDGRGHRHYKIIMLNKRHLGFRVIKLN 313
V + L F + R+ RGH + + ML K+H +R I N
Sbjct: 633 VPIFMLLNFIRCRN-RGHSYRTLFMLQKQHASYRRIAAN 670
>AL110485-24|CAB60372.4| 728|Caenorhabditis elegans Hypothetical
protein Y46G5A.30 protein.
Length = 728
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 197 VTVTQKLLFPQTRDGRGHRHYKIIMLNKRHLGFRVIKLN 313
V + L F + R+ RGH + + ML K+H +R I N
Sbjct: 633 VPIFMLLNFIRCRN-RGHSYRTLFMLQKQHASYRRIAAN 670
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,656,281
Number of Sequences: 27780
Number of extensions: 162122
Number of successful extensions: 357
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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