Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0920
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05980.1 68418.m00662 dihydrofolate synthetase/folylpolygluta...    29   1.4  
At3g08680.2 68416.m01009 leucine-rich repeat transmembrane prote...    28   1.8  
At3g08680.1 68416.m01008 leucine-rich repeat transmembrane prote...    28   1.8  
At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative / cel...    27   4.2  
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product...    26   7.4  
At1g67790.1 68414.m07736 expressed protein                             26   9.7  

>At5g05980.1 68418.m00662 dihydrofolate
           synthetase/folylpolyglutamate synthetase (DHFS/FPGS2)
           nearly identical to gi:17976705; identical to cDNA
           dihydrofolate synthetase/folylpolyglutamate synthetase
           (dhfs/fpgs2 gene) GI:17976704
          Length = 571

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 132 KEIVHTMCVSAAQTNSVLPHFSNKLSLYGVVFISA 28
           ++I+   C+S    N +LPH  N  + YGV F  A
Sbjct: 434 EQILLFNCMSVRDPNLLLPHLKNMCAKYGVNFKKA 468


>At3g08680.2 68416.m01009 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 181 LLDTPRNSNTEVTLPSDT*WTRASTLQNNNAEQTAPRLPG 300
           L+   R  N   T+P    WT   T   NNA  TA RLPG
Sbjct: 38  LVPHSRKLNWNSTIPICASWT-GITCSKNNARVTALRLPG 76


>At3g08680.1 68416.m01008 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profile: PF00069
           Eukaryotic protein kinase domain, PF00560 leucine Rich
           Repeat (5 copies)
          Length = 640

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +1

Query: 181 LLDTPRNSNTEVTLPSDT*WTRASTLQNNNAEQTAPRLPG 300
           L+   R  N   T+P    WT   T   NNA  TA RLPG
Sbjct: 38  LVPHSRKLNWNSTIPICASWT-GITCSKNNARVTALRLPG 76


>At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-beta-1,4-glucanase
           GI:4972236 from [Fragaria x ananassa]
          Length = 626

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 9/40 (22%), Positives = 23/40 (57%)
 Frame = +2

Query: 194 PVTVTQKLLFPQTRDGRGHRHYKIIMLNKRHLGFRVIKLN 313
           P+T++QK+      +G+ +  Y  I+ N+     +++K++
Sbjct: 533 PITISQKMTNSWKNEGKVYYRYSTILTNRSTKTLKILKIS 572


>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
           [Arabidopsis thaliana] GI:871782
          Length = 748

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 163 SFVLKELLDTP-RNSNTEVTLPSDT*WTRASTLQNNNAEQTAPRLPGHQ 306
           +F L+    TP R SNT  T P       A+T +     +T PR P H+
Sbjct: 181 AFSLETRPRTPERRSNTSDTRPRTPIHESAATGRRPQTPETRPRTPDHR 229


>At1g67790.1 68414.m07736 expressed protein
          Length = 576

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
 Frame = +1

Query: 166 FVLKELLDTPRNSNTE-------VTLPSDT*WT 243
           F+L++L D P N+NTE       V +PS   WT
Sbjct: 254 FLLQQLYDHPSNTNTEQNYEIIWVPIPSSQKWT 286


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,025,261
Number of Sequences: 28952
Number of extensions: 143461
Number of successful extensions: 335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)