Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0919
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    46   7e-06
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual        37   0.003
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual    36   0.008
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    34   0.023
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.7  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   3.6  
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    26   4.7  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    26   4.7  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    25   8.2  
SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc...    25   8.2  

>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
 Frame = +2

Query: 257 YGLIPLVNSMDVPGILTRDIDDCVAVLNSVAGPDDLDSTTIKRD---YKPIEIQDIDMSS 427
           YG++   NS D  GI   ++     V N +  PD  DST + ++   +   + + +    
Sbjct: 188 YGMLAFANSFDTVGIAANNVKGVTKVFNVLDHPDINDSTCLTKEARYFVKEQHKKLSRKP 247

Query: 428 VKIGIPKEYHCEGMDREVIDTWSYVSDFLKKKTVL 532
           +KIGIP +++       V+D W+     LK    L
Sbjct: 248 IKIGIPIDWNVSETHPNVLDKWNEFISLLKSNGYL 282



 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +3

Query: 153 IMRTAIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
           I   ++GSDTGGS R PAA  G VG KPS+G +S
Sbjct: 153 ICYASVGSDTGGSIRLPAAYVGCVGFKPSFGRIS 186



 Score = 33.9 bits (74), Expect = 0.023
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +1

Query: 1   VGKCNLDEFAMGSGTIDSIFGPTRNP 78
           +GK N+DEFAMG  + +++FG T NP
Sbjct: 104 LGKTNMDEFAMGVKSENNLFGRTVNP 129


>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = +3

Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
           A+G++T GS  +PA   GVVGLKP+ GL S
Sbjct: 238 ALGTETDGSIIDPAMRNGVVGLKPTVGLTS 267



 Score = 31.9 bits (69), Expect = 0.095
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +2

Query: 257 YGLIPLVNSMDVPGILTRDIDDCVAVLNSVAGPDDLDSTTIKRDYKPIEIQD 412
           YG+IP     D  G + R + D V V  S+ G D+ D  T+ +  K  E  D
Sbjct: 269 YGVIPESEHQDTTGPIARTVRDAVYVFQSMWGIDENDIYTLNQTGKTPEDGD 320


>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 533

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = +3

Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
           IGSD GGS R+PAA  G+ GL+PS
Sbjct: 224 IGSDIGGSIRSPAANNGLFGLRPS 247


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVSVM 260
           IG+D GGS R P+   G+  LKPS G +S +
Sbjct: 226 IGTDIGGSIRIPSCFQGLYALKPSTGRISYL 256


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 188  FN*KSSSFMWCCWVKTL 238
            F+  +S+F+ CCW KTL
Sbjct: 1543 FSFTTSTFLQCCWAKTL 1559


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -3

Query: 304 QYSWYIH*IY*RY*AITDTRPYEGFNPTTPHKAAGFLV---EPPVSEPIAVRMIRW 146
           ++S Y H I+ R+  IT + PY G N     K   +L        SE + V  ++W
Sbjct: 6   KFSSYFHSIFSRFPLITFSNPYPGENEDYKTKTVMYLTMWNSDLNSEALDVNSLQW 61


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 387 SRLIVVESKSSGPATEFNTATQSSISLVSIPGTSIE 280
           S+ +VVE K+   ATE  T +Q  + ++   G +++
Sbjct: 90  SQRVVVEGKNGVVATEEETCSQIGVGILKAGGNAVD 125


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 247 WCQLWPNTFSKFNGCT 294
           W +L+P+ FSKF G T
Sbjct: 150 WLKLFPSAFSKFEGTT 165


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 474 LSIPSQ*YSFGIPIFTDD 421
           L IPS  YS G+P F++D
Sbjct: 53  LQIPSSTYSMGMPSFSED 70


>SPAC31A2.15c |dcc1||DNA replication factor C complex subunit Dcc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 488 CLLLPYPSPHNDILLVYQSLRMTYQYLEFL 399
           C+LL YP P +DI   Y  L +    L+ L
Sbjct: 8   CILLKYPHPSSDISSEYLLLELDDDLLKTL 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,182,908
Number of Sequences: 5004
Number of extensions: 68916
Number of successful extensions: 165
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)