Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0919
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1341 - 32768785-32768847,32770469-32770582,32770809-327708... 53 2e-07
04_01_0102 + 1060539-1060657,1060752-1060904,1061478-1061728,106... 50 2e-06
11_01_0441 - 3363069-3363137,3363273-3363430,3363549-3363613,336... 47 2e-05
04_01_0101 + 1041755-1041864,1041950-1042102,1042174-1042424,104... 46 2e-05
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 44 1e-04
11_05_0078 - 18906900-18907082,18907104-18907337,18907429-189076... 36 0.032
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 34 0.13
06_01_1109 + 9127761-9127976,9128084-9128290,9129539-9129753,913... 33 0.30
04_01_0428 + 5634020-5634232,5634336-5634542,5634911-5635125,563... 33 0.30
10_01_0314 + 3451167-3451715,3451844-3452058,3452254-3452256,345... 32 0.40
03_05_0859 - 28329837-28329919,28330062-28330131,28330498-283305... 32 0.40
04_01_0425 + 5609819-5610331,5610450-5610664,5612720-5612959,561... 31 1.2
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 30 2.1
12_01_0505 - 4005211-4005234,4005235-4005432,4005522-4006006,400... 29 4.9
05_01_0033 + 220125-220190,220274-224445,224863-224949,225048-22... 29 4.9
08_01_0190 - 1583044-1583802 28 6.5
04_04_1659 - 35127145-35127204,35127324-35127464,35127597-351276... 28 6.5
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 8.6
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 28 8.6
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 28 8.6
>04_04_1341 -
32768785-32768847,32770469-32770582,32770809-32770858,
32770940-32771033,32771144-32771221,32771397-32771472,
32771557-32771651,32771748-32771927,32772491-32772802,
32773122-32773670
Length = 536
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/30 (73%), Positives = 26/30 (86%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
++GSDTGGS R PA+ CGVVGLKP+YG VS
Sbjct: 214 SLGSDTGGSVRQPASFCGVVGLKPTYGRVS 243
Score = 43.2 bits (97), Expect = 2e-04
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)
Frame = +2
Query: 257 YGLIPLVNSMDVPGILTRDIDDCVAVLNSVAGPDDLDSTTIKR---DYK----PIE-IQD 412
+GL+ +S+DV G + D +L+ +AG D +DST+ DYK P++ ++
Sbjct: 245 FGLMAYASSLDVVGCFGSSVVDTATILSVIAGHDKMDSTSSSHDVSDYKSELVPLDLLES 304
Query: 413 IDMSSVKIGIPKEYHCEGMDREVIDTWSYVSDFLKK-KTVL*NKSLCHIP-QLQ**YILY 586
++ ++IGI +E EG++ VI + + L++ +V+ SL L YIL
Sbjct: 305 KPLNGMRIGIIQETLGEGVETGVISSIKDAASHLEQLGSVVEEVSLPSFSLGLPAYYILA 364
Query: 587 *NQCESRKQHGLDMMGIEYGLRTDETYSTEELYASSRLRG 706
++ S GI YG R ELY SR G
Sbjct: 365 SSEASSNLSR---YDGIRYG-RQVSGDDLNELYGGSRANG 400
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/31 (61%), Positives = 19/31 (61%)
Frame = +1
Query: 1 VGKCNLDEFAMGSGTIDSIFGPTRNPWQYER 93
VGK NLDEF MGS T S F T NPW R
Sbjct: 163 VGKTNLDEFGMGSTTEGSGFQVTTNPWDDSR 193
>04_01_0102 +
1060539-1060657,1060752-1060904,1061478-1061728,
1061959-1062141,1062248-1062395,1062679-1062850,
1062971-1063105,1063210-1063356
Length = 435
Score = 49.6 bits (113), Expect = 2e-06
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
++G+DTGGS R PAA CG+ GL+PS+GLVS
Sbjct: 131 SLGTDTGGSVRVPAAYCGIFGLRPSHGLVS 160
>11_01_0441 -
3363069-3363137,3363273-3363430,3363549-3363613,
3363709-3363777,3363881-3363973,3364081-3364184,
3364327-3364410,3364486-3364693,3364809-3364880,
3365005-3365080,3365788-3365900,3366006-3366153,
3366996-3367073,3367968-3368097,3368296-3368486,
3368644-3368704,3368847-3368956,3369090-3369312
Length = 683
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/30 (70%), Positives = 24/30 (80%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
A+G+D GGS R PAALCGVVGLKP+ G S
Sbjct: 345 ALGADGGGSVRMPAALCGVVGLKPTAGRFS 374
>04_01_0101 +
1041755-1041864,1041950-1042102,1042174-1042424,
1042878-1043060,1043163-1043310,1043787-1043958,
1057226-1057366,1057478-1057624
Length = 434
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/30 (63%), Positives = 25/30 (83%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
++G+DTGGS R PAA CG+ GL+ S+GLVS
Sbjct: 128 SLGTDTGGSVRVPAAYCGIFGLRTSHGLVS 157
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYG 245
AIG+D GGS R P++LCG++GLK +YG
Sbjct: 291 AIGTDGGGSVRIPSSLCGIIGLKTTYG 317
>11_05_0078 -
18906900-18907082,18907104-18907337,18907429-18907653,
18907739-18907909,18907994-18908109,18908215-18908369,
18908450-18908573,18909007-18909107,18909215-18909297,
18909383-18909607,18909694-18909810,18910488-18910640
Length = 628
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 162 TAIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
T+ GS+T GS PAA CGV L+ ++G V+
Sbjct: 317 TSAGSETAGSITYPAARCGVTALRTTFGTVA 347
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
+G++T GS PA+L VVG+KP+ GL S
Sbjct: 202 LGTETDGSILCPASLNSVVGIKPTVGLTS 230
Score = 31.5 bits (68), Expect = 0.70
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Frame = +2
Query: 260 GLIPLVNSMDVPGILTRDIDDCVAVLNSVAGPDDLD--STTIKRDYKPIE-----IQDID 418
G+IP+ D G + R + D VL+ + G D+LD +T Y P ++
Sbjct: 233 GVIPISPRQDTVGPICRTVSDAAHVLDVIVGFDELDAEATGAASKYIPSGGYGRFLRMDG 292
Query: 419 MSSVKIGIPKEYHCEG 466
+ +IGIP + EG
Sbjct: 293 LKGKRIGIPNGFFTEG 308
>06_01_1109 +
9127761-9127976,9128084-9128290,9129539-9129753,
9131665-9131904,9133372-9133570,9134666-9134992,
9135977-9136070,9136307-9136320
Length = 503
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
+G++T GS P++L VVG+KP+ GL S
Sbjct: 170 LGTETDGSILCPSSLNSVVGIKPTVGLTS 198
>04_01_0428 +
5634020-5634232,5634336-5634542,5634911-5635125,
5637880-5638119,5639112-5639310,5639954-5640319
Length = 479
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
+G++T GS P++L VVG+KP+ GL S
Sbjct: 169 LGTETDGSILCPSSLNSVVGIKPTVGLTS 197
>10_01_0314 +
3451167-3451715,3451844-3452058,3452254-3452256,
3452602-3452803,3453353-3453418,3453505-3453747,
3453831-3454196
Length = 547
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 153 IMRTAIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
++ IG++T GS P++ VVG+KP+ GL S
Sbjct: 207 MVAVTIGTETDGSIMCPSSYNSVVGIKPTVGLTS 240
>03_05_0859 -
28329837-28329919,28330062-28330131,28330498-28330549,
28330671-28330798,28331283-28331483,28332183-28332317,
28333116-28333275,28333824-28334019,28334070-28334252,
28334382-28334507,28335090-28335214,28335389-28335541,
28337267-28337472
Length = 605
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 153 IMRTAIGSDTGGSTRNPAALCGVVGLKPSYGLV 251
I+ ++G DT G R P + CGV+ +PS+ +V
Sbjct: 156 IVDFSLGIDTIGGVRVPGSYCGVLAFRPSHAVV 188
>04_01_0425 +
5609819-5610331,5610450-5610664,5612720-5612959,
5613122-5613232,5613789-5613987,5614097-5614453
Length = 544
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
+G++T S PAA VVG+KP+ GL S
Sbjct: 200 VGTETTASILCPAAANSVVGIKPTVGLTS 228
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +3
Query: 99 LENSWWQLWWKRCCRDHRIMRTAIGSDTGG 188
LE SW LWW D R + TA+G D GG
Sbjct: 127 LEGSW--LWWLETAADLRRLATAVG-DVGG 153
>12_01_0505 -
4005211-4005234,4005235-4005432,4005522-4006006,
4006533-4006700,4007128-4007203,4007327-4007409,
4007511-4007589,4007685-4007753,4008174-4008266,
4008668-4008713,4009398-4009522
Length = 481
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 308 RDIDDCVAVLNSVAGPDDLDSTTIKRDYKPIEIQDIDMSSVKIGIP 445
R +D C+ V S DLD T++ DYK I +DM + G P
Sbjct: 250 RMVDGCMEV--SQHAVKDLDETSVCEDYKKISKLFLDMLELNKGHP 293
>05_01_0033 +
220125-220190,220274-224445,224863-224949,225048-225084,
225296-225356,225666-226918
Length = 1891
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 221 CWVKTLIWPGVSYGLIPLVNSMDVPG-ILTRDID 319
C+ + L WPGV +P V + PG +++R +D
Sbjct: 42 CFHRHLCWPGVRRASVPNVRLLPTPGALVSRGLD 75
>08_01_0190 - 1583044-1583802
Length = 252
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Frame = +3
Query: 66 NPEPMAVR-KK*LENSWWQLWWKRCCR-----DHRIMRTAI---GSDTGGSTRNPAA 209
+P P + R ++ + W+LWW+RC +I R A+ G GG R AA
Sbjct: 12 SPSPSSTRGRRRVSVKPWRLWWRRCAGVAAVIQSKIHRRAVRWPGGHGGGRRRREAA 68
>04_04_1659 -
35127145-35127204,35127324-35127464,35127597-35127647,
35127757-35127837,35128229-35128324,35128393-35128568,
35130088-35130176,35130255-35130362,35130673-35130809,
35131023-35131073,35131264-35131310,35131477-35131544,
35132161-35132262,35132556-35132735,35132821-35133059
Length = 541
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +2
Query: 350 GPDDLDSTTIKRDYKPIEIQDIDMSSVKIGIPKEYHCEGMDREVIDTW 493
G DD ++++ +RD K + + +I SS I PK + +D V+D W
Sbjct: 164 GVDDFEASSARRDSKFVRVHEIIFSS--IDKPKLLNGFCLDVFVVDGW 209
>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 500 HNSMCLLLPYPSPHNDILLVYQS 432
H S LLLPY +PH D ++ Q+
Sbjct: 1078 HQSHALLLPYAAPHADAIVKKQT 1100
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 638 QYPSYLAHVACDFHIDF--SIEYTTIEAEEYGKETCFTIQFSFSRNH*HNSMCLLLPYPS 465
+Y Y+ + C F ++ + + A KE Q+ F +N+ +N + +LP P
Sbjct: 62 EYIKYIMYPHCLFFLELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILPRPP 121
Query: 464 P 462
P
Sbjct: 122 P 122
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 638 QYPSYLAHVACDFHIDF--SIEYTTIEAEEYGKETCFTIQFSFSRNH*HNSMCLLLPYPS 465
+Y Y+ + C F ++ + + A KE Q+ F +N+ +N + +LP P
Sbjct: 64 EYIKYIMYPHCLFFLELLQNANFRNAMAHPASKEVAHRQQYFFWKNYRNNRLKHILPRPP 123
Query: 464 P 462
P
Sbjct: 124 P 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,077,091
Number of Sequences: 37544
Number of extensions: 421251
Number of successful extensions: 1008
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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