Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0919
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2042| Best HMM Match : Amidase (HMM E-Value=0)                      53   3e-07
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     36   0.044
SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)               34   0.13 
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)          28   8.8  

>SB_2042| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 796

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 23/37 (62%), Positives = 27/37 (72%)
 Frame = +3

Query: 153 IMRTAIGSDTGGSTRNPAALCGVVGLKPSYGLVSVMA 263
           ++  AIG D GGS R PAA CG+VGLKP+YGLV   A
Sbjct: 143 VVDMAIGGDQGGSIRTPAAACGIVGLKPTYGLVPYTA 179



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 22/33 (66%), Positives = 25/33 (75%)
 Frame = +3

Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVSVMA 263
           A+G D GGS R PAA CG+VGLKP+YGLV   A
Sbjct: 624 ALGGDQGGSIRIPAAACGIVGLKPTYGLVPYTA 656


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 35.5 bits (78), Expect = 0.044
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +3

Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLV 251
           +GSD GGS R PA   G+ G KPS G+V
Sbjct: 243 VGSDVGGSIRMPAFFNGISGHKPSPGIV 270


>SB_50457| Best HMM Match : Amidase (HMM E-Value=2.6e-36)
          Length = 391

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
           AIG+D  GS R PAA  G+ G++P+   +S
Sbjct: 184 AIGTDNSGSIRIPAAFNGIYGIRPTQNSIS 213


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -3

Query: 487 VYYFPIHPLTMIFFWYTNLYG*HINILNFYWFIISFDSRRV 365
           V+Y  I PL ++ FW T LY    ++++ YW  + F +  V
Sbjct: 193 VFYRIIIPLAILSFWKTVLYFIIADLVSSYWLALVFQASHV 233


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 236  LIWPGVSYGLIPLVNSMDVPGILTRD------IDDCVAVLNSVAGPDDLDSTTIKRDYKP 397
            L + G+ +    +VN+   PG    D      IDDC   L+ + G D LD T + ++   
Sbjct: 1049 LSFNGLLFETNGMVNASVAPGASKNDFPRKVEIDDCSDDLSDIFGDDSLDDTDLVKNLNE 1108

Query: 398  IEIQ 409
            IE Q
Sbjct: 1109 IEEQ 1112


>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
 Frame = +3

Query: 111 WWQLW---WKRCCRDHRIMRTAIGS----DTGGSTRNPAALCGVVGLKPSYGLV 251
           WW+     + R C      R A GS    D GGS R P+   GV G KPS  +V
Sbjct: 44  WWESANRVYGRTCNPFDTARIAGGSSGGEDIGGSIRMPSFFNGVFGHKPSPDVV 97


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 499  ITPCVYYFPIHPLTMIFFWYTNLYG*HINILNFY 398
            I+P V       +  + FWY ++YG H+N LN Y
Sbjct: 2335 ISPVVSGNGTKVIRCVSFWY-HMYGPHVNALNLY 2367


>SB_30883| Best HMM Match : F5_F8_type_C (HMM E-Value=9.4e-30)
          Length = 679

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 43  TIDSIFGPTRNPWQYERNNWKI 108
           T  S FGP   PWQ   NN  I
Sbjct: 19  TASSFFGPNHTPWQARLNNQMI 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,254,838
Number of Sequences: 59808
Number of extensions: 487948
Number of successful extensions: 1166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)