Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0919
(720 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical ... 63 2e-10
AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical... 37 0.013
AL132860-10|CAB60525.1| 615|Caenorhabditis elegans Hypothetical... 36 0.022
AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical ... 36 0.022
AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical ... 36 0.029
AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical ... 35 0.067
U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical pr... 34 0.12
U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical pr... 32 0.47
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 4.4
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 4.4
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 4.4
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 28 7.7
AL021171-4|CAA15959.1| 409|Caenorhabditis elegans Hypothetical ... 28 7.7
>AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical
protein Y41D4A.6 protein.
Length = 452
Score = 62.9 bits (146), Expect = 2e-10
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Frame = +2
Query: 260 GLIPLVNSMDVPGILTRDIDDCVAVLNSVAGPDDLDSTTIKRDYKPIEIQDIDMSSVKIG 439
GLIPLVNS+D P I + C +L G D DST+++ P + + +KIG
Sbjct: 177 GLIPLVNSLDAPSIFAKTAQKCWELLELSKGIDKNDSTSVE---LPEKAGISSLEGLKIG 233
Query: 440 IPKEYHCEGMDREVIDTWSYVSDFLKKKTVL*NKSLCHIPQLQ**YILY*NQCESRKQHG 619
IP EYH E + + W+ V+ LK + + ++P + Y +
Sbjct: 234 IPVEYHNECLTEDAWRHWNRVTGLLKSRGAA-EIHVLNLPTTRFSLACYSVIAAADVASN 292
Query: 620 LDMM-GIEYGLRTDETYSTEELYASSRLRGFSEV 718
+ + YG R+ ST E+YASSR + +
Sbjct: 293 MARYDSVAYGHRSSSDSSTYEMYASSRSEALNTI 326
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/30 (70%), Positives = 26/30 (86%)
Frame = +3
Query: 165 AIGSDTGGSTRNPAALCGVVGLKPSYGLVS 254
A+GSDTGGSTRNPAA G+ G KP+YG++S
Sbjct: 145 ALGSDTGGSTRNPAAFNGIFGFKPTYGVLS 174
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 1 VGKCNLDEFAMGSGTIDSIFGPTRN 75
+GK NLDEF MG+ + FGP ++
Sbjct: 88 IGKTNLDEFCMGTSSALGHFGPVKS 112
>AL132949-16|CAB61089.1| 535|Caenorhabditis elegans Hypothetical
protein Y53F4B.18 protein.
Length = 535
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSYGLVSVM 260
+GSD GGS R PA GV GLKP+ G++ ++
Sbjct: 226 VGSDIGGSIRMPAFFNGVFGLKPTPGVIPLI 256
>AL132860-10|CAB60525.1| 615|Caenorhabditis elegans Hypothetical
protein Y56A3A.12b protein.
Length = 615
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
IGSD GS R PAA CG+V LKP+
Sbjct: 225 IGSDLAGSLRIPAAFCGLVTLKPT 248
>AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical
protein Y56A3A.12a protein.
Length = 647
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
IGSD GS R PAA CG+V LKP+
Sbjct: 257 IGSDLAGSLRIPAAFCGLVTLKPT 280
>AF045643-6|AAC02593.2| 570|Caenorhabditis elegans Hypothetical
protein F58H7.2 protein.
Length = 570
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
IG+D GGS R PA+ CG+ G K S
Sbjct: 229 IGTDVGGSIRTPASFCGLAGFKSS 252
>AL132860-4|CAB60496.1| 762|Caenorhabditis elegans Hypothetical
protein Y56A3A.5 protein.
Length = 762
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
IG+D GS R PAA CG+V LKP+
Sbjct: 377 IGNDLVGSLRIPAAFCGLVSLKPT 400
>U58752-2|AAB00665.1| 571|Caenorhabditis elegans Hypothetical
protein B0218.2 protein.
Length = 571
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPSY 242
IG D GGS R P A G G+KPS+
Sbjct: 232 IGGDVGGSIRIPCAYTGTTGIKPSH 256
>U58752-4|AAB00667.1| 572|Caenorhabditis elegans Hypothetical
protein B0218.1a protein.
Length = 572
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +3
Query: 168 IGSDTGGSTRNPAALCGVVGLKPS 239
IG+D GGS R P G G+KPS
Sbjct: 231 IGTDVGGSVRIPCHFTGTAGIKPS 254
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -3
Query: 250 TRPYEGFNPTTPHK----AAGFLVEPPVSEPI 167
T P E FNP TP+K A L E P S+P+
Sbjct: 1098 TLPKEQFNPNTPYKIRISATNDLSEGPASDPV 1129
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -3
Query: 250 TRPYEGFNPTTPHK----AAGFLVEPPVSEPI 167
T P E FNP TP+K A L E P S+P+
Sbjct: 1161 TLPKEQFNPNTPYKIRISATNDLSEGPASDPV 1192
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = -3
Query: 250 TRPYEGFNPTTPHK----AAGFLVEPPVSEPI 167
T P E FNP TP+K A L E P S+P+
Sbjct: 1161 TLPKEQFNPNTPYKIRISATNDLSEGPASDPV 1192
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
D2045.2 protein.
Length = 1792
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/75 (21%), Positives = 31/75 (41%)
Frame = +2
Query: 317 DDCVAVLNSVAGPDDLDSTTIKRDYKPIEIQDIDMSSVKIGIPKEYHCEGMDREVIDTWS 496
D + +L ++ + KR+ EI+D++ + K G I TW+
Sbjct: 1545 DGKIEILRALTSAFEAGGADFKRNMSATEIEDMETVLRREASKKNMEYAGAGLATIATWA 1604
Query: 497 YVSDFLKKKTVL*NK 541
+S+ ++ T L K
Sbjct: 1605 VISESVESATWLAKK 1619
>AL021171-4|CAA15959.1| 409|Caenorhabditis elegans Hypothetical
protein H04D03.3 protein.
Length = 409
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/75 (21%), Positives = 31/75 (41%)
Frame = +2
Query: 317 DDCVAVLNSVAGPDDLDSTTIKRDYKPIEIQDIDMSSVKIGIPKEYHCEGMDREVIDTWS 496
D + +L ++ + KR+ EI+D++ + K G I TW+
Sbjct: 162 DGKIEILRALTSAFEAGGADFKRNMSATEIEDMETVLRREASKKNMEYAGAGLATIATWA 221
Query: 497 YVSDFLKKKTVL*NK 541
+S+ ++ T L K
Sbjct: 222 VISESVESATWLAKK 236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,645
Number of Sequences: 27780
Number of extensions: 374348
Number of successful extensions: 993
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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