Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0919
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          24   1.3  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.9  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.9  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.9  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 334 YGNTIINISCQYSWYIH 284
           YG    N+SC  SW +H
Sbjct: 40  YGPEAGNVSCSVSWEVH 56


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 96  ISFVLPWVPGWT 61
           +S  +PW  GWT
Sbjct: 131 VSSKMPWFKGWT 142


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 511 LEKENCIVKQVSLPYSSASIVVY 579
           L+ +NC V+  S  Y+   +V+Y
Sbjct: 170 LDSQNCTVEIESYGYTVLDVVMY 192


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 356  DDLDSTTIKRDYKPIEIQD 412
            DDLD  T+K  +KP   +D
Sbjct: 986  DDLDQHTLKVTWKPPPRED 1004


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 96  ISFVLPWVPGWT 61
           +S  +PW  GWT
Sbjct: 147 VSSKMPWFKGWT 158


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 96  ISFVLPWVPGWT 61
           +S  +PW  GWT
Sbjct: 204 VSSKMPWFKGWT 215


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,807
Number of Sequences: 438
Number of extensions: 4740
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)