Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    28   1.1  
SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomy...    27   2.6  
SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   5.9  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   5.9  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       26   5.9  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    25   7.8  

>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +3

Query: 186 KRFPNLDMDTLKAEYPNVDIEKAKEQRNQEDIL 284
           +RF N D + L+A+Y  +  E+  ++ NQ++++
Sbjct: 39  RRFLNYDNNALEAKYNEIITEEVSQEPNQKNVI 71


>SPBC19G7.02 |||4-amino-4-deoxychorismate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 39  NTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRD 161
           N +W+ P LKHG ++    K    L N  IH + +    +D
Sbjct: 150 NGQWITPSLKHGLLSGTMRKNL--LENGSIHEDDKGLLQKD 188


>SPAC343.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 553 VYSLKLTIHSHYILKQIYCLSKLVKLIS 636
           VY L +T+H+  + K IYC + L  L S
Sbjct: 67  VYYLAITLHTSLLTKLIYCHADLYALQS 94


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -2

Query: 173 DMVKVSIV-CFPHFAMDFFIIQSSKLFYCQTVDEAMF*IWSYPT 45
           DM+K+S+V C     +    +    LF+   +D +++  WS PT
Sbjct: 218 DMLKLSLVGCVKEGIVHPVTVVDYLLFHLNRIDPSLYSKWSLPT 261


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -3

Query: 577  E*STLDYILYIFHRWMNQNLNCIQLSNALNWNTWLFCQEK*EGW 446
            E +T +  +  ++ W++Q+    + +   NW  WL   E  EGW
Sbjct: 1090 EPNTENVYINSYNLWVDQSSQSKKQNRTTNWRRWL---ESDEGW 1130


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 160 SLLCAFLTSLWIFSLYNLLNFFTAKLLMKPCFRYGLT-QRVFINLGVSYSD 11
           SLL   +  L+ FS+  L  F   K  ++P + Y L  +R  I L  ++ D
Sbjct: 33  SLLSFLIYILYTFSISGLSTFVITKYYIRPQWLYTLALRRALIKLYYNFMD 83


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 174 QHLLKRFPNLDMDTLKAEYPNVDIEKAKEQRNQE 275
           +H++K   NL+     AE   V  E  ++Q+N+E
Sbjct: 69  EHIIKALENLEFKEYIAEALEVAAEHKEQQKNRE 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,694,124
Number of Sequences: 5004
Number of extensions: 54470
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)