Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0006 - 9496990-9497592,9497695-9497802,9497884-9497997,949...    30   1.5  
07_03_1788 + 29523216-29524867,29525048-29525075                       30   2.0  
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     29   2.6  
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    29   3.5  

>10_06_0006 -
           9496990-9497592,9497695-9497802,9497884-9497997,
           9498170-9498219,9498346-9498434,9498542-9498738,
           9498877-9499038,9499337-9499455,9499579-9499666,
           9499744-9499849,9499968-9500056,9500167-9500319,
           9500434-9500526,9500625-9500691,9500811-9500923,
           9501544-9501639,9501782-9501961
          Length = 808

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 389 HSLAAGKAYYKYNYIGRYWPSFL 457
           H L  G A+   N +GRYWPS++
Sbjct: 625 HGLNKGVAWVNGNSLGRYWPSYV 647


>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 45  RWVRPYLKHGFINSLAVKKFRRL-YNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLK 221
           R  RP+L   FI  L      R+ ++ ++H+ V KAH R F+  + L    P+    TL 
Sbjct: 153 RIARPFLPRDFIALLHDLAAHRMGFSNRVHAAVAKAHLRAFDKFRGL----PDPPEYTLH 208

Query: 222 AEYPNVDIEKA 254
              PNV    A
Sbjct: 209 LGLPNVSAAAA 219


>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 454 PISPGKTAMCSSSMRSRAVYN*DSDSSIYGIYKVY 558
           P+ PG T    S   + AV+   ++ S+YG++K+Y
Sbjct: 3   PLVPGATRAALSEFVATAVFVFAAEGSVYGLWKMY 37


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -3

Query: 142 LTSLWIFSLYNLLNFFTAKLLMKPCFRYGLTQRVFINLGVSYSDA 8
           L +LW+  L ++L   T KLL   C  Y L + VF N G  Y DA
Sbjct: 799 LRALWV--LQDVLMPITLKLLTALCVPYALAKGVFPNFG--YPDA 839


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,228
Number of Sequences: 37544
Number of extensions: 264303
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)