Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                31   0.67 
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   8.2  

>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 169  WLKSLLCAFLTSLWIFSLYNLLNFFTA-KLLMKPCFRYGLTQRVFI 35
            WL+S+ C    S+    +Y+L+   T  +LL+KP +R     + FI
Sbjct: 6716 WLQSVSCCLFCSVHYIVVYSLIILQTVLRLLIKPSYRIANVDKAFI 6761


>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -3

Query: 265 LCSLAFSISTFGYSAFKVSISRLGKRLSKCWTWLKSLLCAFLTSLWIFSLYNLLNFFTAK 86
           L ++A  +    Y AF               T L  L  AF + LW F  +N LN+ T +
Sbjct: 172 LTAIAVVVLLGAYHAFSGHTKNFQDLFKGTSTNLGKLAHAFYSGLWAFDGWNQLNYCTGE 231

Query: 85  L 83
           L
Sbjct: 232 L 232


>SB_30132| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 355

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 175 WTWLKSLLCAFLTSLWIFSLYNLLNF 98
           + WL+SL+CA  TS ++FS +  L F
Sbjct: 160 YIWLQSLICA--TSTFLFSKFEFLKF 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,282,170
Number of Sequences: 59808
Number of extensions: 336300
Number of successful extensions: 4302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4302
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)