Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089479-1|AAL90217.1|  271|Drosophila melanogaster AT29239p pro...    68   1e-11
AE014297-955|AAO41525.1|  271|Drosophila melanogaster CG9378-PB,...    68   1e-11
X73219-1|CAA51687.1|  181|Drosophila melanogaster Rlc1 protein.        33   0.48 
X73218-1|CAA51686.1|  181|Drosophila melanogaster Rlc1 protein.        33   0.48 
X73217-1|CAA51685.1|  181|Drosophila melanogaster Rlc1 protein.        33   0.48 
AE014297-956|AAF54390.2|  227|Drosophila melanogaster CG9378-PA,...    33   0.48 
AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX transcri...    29   7.9  
AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA...    29   7.9  

>AY089479-1|AAL90217.1|  271|Drosophila melanogaster AT29239p
           protein.
          Length = 271

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 31/86 (36%), Positives = 53/86 (61%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLL 185
           +A E+  P FMN +W++     G+    AV +F   Y EK+++  RKA NR  N V  +L
Sbjct: 175 KACEHALPPFMNLKWIKSR-NIGY-GGRAVNRFLLKYREKLYNAKRKAKNRSRNEVMMIL 232

Query: 186 KRFPNLDMDTLKAEYPNVDIEKAKEQ 263
           +R PN D+D L+ ++P+V+++K + +
Sbjct: 233 RRNPNFDLDVLRRQFPDVNVDKLRNE 258


>AE014297-955|AAO41525.1|  271|Drosophila melanogaster CG9378-PB,
           isoform B protein.
          Length = 271

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 31/86 (36%), Positives = 53/86 (61%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHLL 185
           +A E+  P FMN +W++     G+    AV +F   Y EK+++  RKA NR  N V  +L
Sbjct: 175 KACEHALPPFMNLKWIKSR-NIGY-GGRAVNRFLLKYREKLYNAKRKAKNRSRNEVMMIL 232

Query: 186 KRFPNLDMDTLKAEYPNVDIEKAKEQ 263
           +R PN D+D L+ ++P+V+++K + +
Sbjct: 233 RRNPNFDLDVLRRQFPDVNVDKLRNE 258


>X73219-1|CAA51687.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 149
           +A E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 129 KACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>X73218-1|CAA51686.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 149
           +A E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 129 KACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>X73217-1|CAA51685.1|  181|Drosophila melanogaster Rlc1 protein.
          Length = 181

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 149
           +A E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 129 KACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 174


>AE014297-956|AAF54390.2|  227|Drosophila melanogaster CG9378-PA,
           isoform A protein.
          Length = 227

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 6   RASEYDTPKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKA 149
           +A E+  P FMN +W++   ++      AV +F   Y EK+++  RKA
Sbjct: 175 KACEHALPPFMNLKWIKS--RNIGYGGRAVNRFLLKYREKLYNAKRKA 220


>AJ133103-1|CAB63452.1|  897|Drosophila melanogaster RFX
           transcription factor protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 63  LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 194
           L H F + L    V  FR LY E   S +    N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587


>AE014297-1144|AAF54526.2|  897|Drosophila melanogaster CG6312-PA
           protein.
          Length = 897

 Score = 28.7 bits (61), Expect = 7.9
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +3

Query: 63  LKHGFINSLA---VKKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRF 194
           L H F + L    V  FR LY E   S +    N +FN V+ LL+ F
Sbjct: 541 LNHSFNSELTLEDVDTFRGLYREHCESFLDAVLNLEFNTVEFLLRDF 587


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,113,084
Number of Sequences: 53049
Number of extensions: 485374
Number of successful extensions: 1146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3005453946
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)