Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside tri...    29   2.4  
AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical...    29   3.1  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical...    29   4.1  
Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.      28   7.2  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical ...    28   7.2  

>Z82276-8|CAL69741.1|  281|Caenorhabditis elegans Hypothetical
           protein K03D3.14 protein.
          Length = 281

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -3

Query: 298 LISWHKMSS*FLCSLAFSISTFGYSAFKVSISR-LGKRLSKCWTWLKSLLCAFLTSLWIF 122
           +I +  + +   CSL     TFG   F +++ + L     +   +L S    FL  +WI 
Sbjct: 64  IIQYESLINLMYCSLFIIDQTFGMLVFSIALEKCLCNFFPRLEPYLTSARDGFLNKIWIL 123

Query: 121 SLYNLLNFFTAKLLMKPCFRY 59
            + ++L   +  ++ +   +Y
Sbjct: 124 YIVHVLKEISIYVVTRRILKY 144


>U41625-3|AAA83326.1|  264|Caenorhabditis elegans Hypothetical
           protein K03A1.4a protein.
          Length = 264

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 78  INSLAVKKFRRLYNEKIHSEVRKAH--NRDFNHVQHLLKRFPNLDMDTLKA 224
           IN+ A  K R       H+ ++K +  N D    +H L  F  L+MD+LKA
Sbjct: 35  INTTAYVKSREANLRNPHNYLKKTNLSNSDLRSRRHFLTLFKLLEMDSLKA 85


>U41007-12|AAA82272.1|  485|Caenorhabditis elegans Nucleoside
           triphosphatase protein 1 protein.
          Length = 485

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 120 EKIHSEVRKAHNRDFNHVQHLLKR--FPNLDMDTL 218
           +K   EVRK   +D+N +Q   KR  FPN D++ L
Sbjct: 337 QKFTDEVRKYCQKDWNDIQDGFKRNEFPNADIERL 371


>AL033514-16|CAA22103.2|  465|Caenorhabditis elegans Hypothetical
           protein Y75B8A.16 protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 268 FLCSLAFSISTFGYSAFKVSISRLGKRLSKCWTWLKSL-LCAFLTSLWIFSLYNLLNFFT 92
           F  + AFS S F    F+++        S+CWT+  SL L   +  + +++ Y ++    
Sbjct: 49  FSLTFAFSCSLFELIIFEIAGVMAPLSRSRCWTFCLSLILITLVVVIPVYTSYLIIRGIV 108

Query: 91  AKLLMKP 71
            K L  P
Sbjct: 109 RKHLQLP 115


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = +3

Query: 150 HNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEKAKEQRNQEDI 281
           HN+DFN ++ L+ ++  L ++  K    ++ ++ A ++R + D+
Sbjct: 542 HNQDFNKMKELIVKWQPLFLNYYKTSAESLKVKSADQKRFELDL 585


>AL031630-18|CAA21002.1|  278|Caenorhabditis elegans Hypothetical
           protein Y38H6C.21 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +3

Query: 57  PYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHNRDFNHVQHL 182
           P L +   + L + K RR  NEK HS+ +KAH   FN + ++
Sbjct: 26  PILNNLTFSLLFLHKRRRKSNEK-HSDFQKAHTPIFNQLYYI 66


>Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical
           protein T09A5.7 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 201 LDMDTLKAEYPNVDIEKAKEQRNQE 275
           +D+D ++ EY N D +K K+++N +
Sbjct: 68  IDLDEIRKEYLNTDDDKLKDRQNNQ 92


>AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 201 LDMDTLKAEYPNVDIEKAKEQRNQE 275
           +D+D ++ EY N D +K K+++N +
Sbjct: 68  IDLDEIRKEYLNTDDDKLKDRQNNQ 92


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 99  KFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEK 251
           K+R LYNEK+ + +    NR    ++H LK   + D+   K     +  EK
Sbjct: 797 KYRNLYNEKL-TAISDKENRSQIEMEHKLKNAES-DLQEAKRRAEEIGAEK 845


>AF025467-4|AAN65300.1| 1130|Caenorhabditis elegans Hypothetical
           protein R148.3b protein.
          Length = 1130

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 99  KFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAEYPNVDIEK 251
           K+R LYNEK+ + +    NR    ++H LK   + D+   K     +  EK
Sbjct: 809 KYRNLYNEKL-TAISDKENRSQIEMEHKLKNAES-DLQEAKRRAEEIGAEK 857


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,233,234
Number of Sequences: 27780
Number of extensions: 278862
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)