Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0918
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g08700.1 68417.m01438 purine permease family protein similar ...    32   0.31 
At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,...    30   1.3  
At5g41160.1 68418.m05003 purine permease-related similar to puri...    29   2.9  
At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,...    29   3.8  
At4g32700.1 68417.m04655 DNA-directed DNA polymerase family prot...    28   5.1  
At5g25960.1 68418.m03088 hypothetical protein various predicted ...    28   6.7  
At4g24810.1 68417.m03554 ABC1 family protein contains Pfam domai...    28   6.7  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   6.7  
At3g59250.1 68416.m06605 F-box family protein contains F-box dom...    28   6.7  
At3g29075.1 68416.m03637 glycine-rich protein                          27   8.9  
At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,...    27   8.9  

>At4g08700.1 68417.m01438 purine permease family protein similar to
           purine permease [Arabidopsis thaliana] GI:7620007;
           contains Pfam profile PF03151: Domain of unknown
           function, DUF250
          Length = 361

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 304 NNLISWHKMSS*FLCSLAFSISTFGYSAFKVSISRLGKRLS--KCWTWLKSLLCAFLTSL 131
           N + S++  S    C + FS+     SA  VS+       S    W++L   LC    SL
Sbjct: 144 NGVFSYYINSQKITCLILFSVLFLSVSAVLVSLDDDSNSPSGDSKWSYLIGCLCTVFASL 203

Query: 130 WIFSL-YNLLNFFTAKLLMKPCFRYGLTQRVFINLGVS 20
            I+SL  +L+ F    +L    F   L  +++ +L  S
Sbjct: 204 -IYSLQLSLMQFSFENVLKSETFSMVLEMQIYTSLVAS 240


>At1g31740.1 68414.m03894 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           [Brassica oleracea] SWISS-PROT:P49676
          Length = 786

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 395 LAAGKAYYKYNYIGRYWPSFL 457
           L  G A+   N IGRYWP+FL
Sbjct: 645 LGKGTAWINGNNIGRYWPAFL 665


>At5g41160.1 68418.m05003 purine permease-related similar to purine
           permease [Arabidopsis thaliana] GI:7620007; contains
           Pfam profile PF03151: Domain of unknown function, DUF250
          Length = 358

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = -3

Query: 304 NNLISWHKMSS*FLCSLAFSISTFGYSAFKVSISRLGKRLS--KCWTWLKSLLCAFLTSL 131
           N +  ++  S    C + FS+     SA  VS+       S    W++L    CA   SL
Sbjct: 141 NGVFYYYINSQKITCLIFFSVLFLSISAVLVSLDDDSNSPSGDSKWSYLIGCFCAVFASL 200

Query: 130 WIFSL-YNLLNFFTAKLLMKPCFRYGLTQRVFINLGVS 20
            I+SL  +L+ F   K+L        L  +++ +L  S
Sbjct: 201 -IYSLQLSLMQFSFEKVLKSETLSMVLEMQIYTSLVAS 237


>At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,
           putative strong similarity to beta-galactosidase
           precursor (EC 3.2.1.23) (Lactase) SP:P49676 from
           [Brassica oleracea]
          Length = 769

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 389 HSLAAGKAYYKYNYIGRYWPSF 454
           + L  G+A+     IGRYWPSF
Sbjct: 586 NGLGKGEAWINGQSIGRYWPSF 607


>At4g32700.1 68417.m04655 DNA-directed DNA polymerase family protein
            similar to DNA helicase HEL308 [Homo sapiens]
            GI:19110782; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain, PF00476: DNA polymerase family A
          Length = 1548

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
 Frame = -2

Query: 176  LDMVKVS--IVCFPHFAMDFFIIQSSKLF 96
            LD+++ S  ++ FP+ A  FFII+ ++LF
Sbjct: 1214 LDLLRYSEWLIAFPYIAFCFFIIKDNRLF 1242


>At5g25960.1 68418.m03088 hypothetical protein various predicted
           proteins, Arabidopsis thaliana contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 425 NYIGRYWPSFLFLLAKQPCVPVQCVRELYT 514
           N IG YWP  LF   K     VQC  E+++
Sbjct: 240 NVIG-YWPGTLFAYLKHSATAVQCGGEVHS 268


>At4g24810.1 68417.m03554 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 438

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 386 KHSLAAGKAYYKYNYIGRYWPSFLFLLAKQPCVPVQCVRELYTI 517
           +H LAA K Y   + +G ++     +L K    P   VR+L T+
Sbjct: 17  QHELAAHKVYSMCSDLGGFFLKIAQILGKPDLAPAAWVRKLVTL 60


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 27  PKFMNTRWVRPYLKHGFINSLAVKKFRRLYNEKIHSEVRKAHN 155
           P+FM+  W RPYL   F  ++  KK ++   E   SE +K ++
Sbjct: 21  PRFMHLSWKRPYLTRVFDLAVIQKKQKK---EMSDSEEKKCND 60


>At3g59250.1 68416.m06605 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 425

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 106 EDCIMKKSIAK*GKHTIETLTMSNIYSNV 192
           EDC  K +    G H +E L ++N+YSNV
Sbjct: 143 EDCFEKLTS---GCHVLEELVLNNVYSNV 168


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = +3

Query: 96  KKFRRLYNEKIHSEVRKAHNRDFNHVQHLLKRFPNLDMDTLKAE-YPNVDIEKAKEQRNQ 272
           KK ++ YN+    E +K HN + +  +   K+  + D D  K + Y N D EK K++ ++
Sbjct: 218 KKKKKHYNDD-DDEKKKKHNYNDDDDEKKKKKEYHDDEDKKKKKHYDNDDDEKKKKKDHR 276

Query: 273 ED 278
           +D
Sbjct: 277 DD 278


>At2g04060.1 68415.m00387 beta-galactosidase, putative / lactase,
           putative similar to beta-galactosidase precursor
           SP:P49676 from [Brassica oleracea]
          Length = 469

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 404 GKAYYKYNYIGRYWP 448
           GKA    NY GRYWP
Sbjct: 302 GKASINENYTGRYWP 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,743
Number of Sequences: 28952
Number of extensions: 244584
Number of successful extensions: 601
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)