Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0917
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          22   4.2  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   4.2  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           22   4.2  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    22   5.5  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    22   5.5  

>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 92  TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 250
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 152 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 205


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 92  TSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYS-TVSRS 250
           ++PRS      SS +     S  S+   ++  RLL  +P+      YS T+  S
Sbjct: 143 STPRSSPAETASSLSPQSVASTASSADHQIVDRLLSHAPIDSANQWYSQTIDNS 196


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 368 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 475
           +H  E + +V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHSVKEEPIYESCRFSINQPYLNHFDNSVT 75



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 217 SSQWRRLQQTEAQSFHWCRRHGDS 146
           S++   + +  A  + W + HGDS
Sbjct: 155 SAEENSVSEPPANFYPWMKAHGDS 178


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 368 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 475
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 217 SSQWRRLQQTEAQSFHWCRRHGDS 146
           S++   + +  A  + W + HGDS
Sbjct: 155 SAEENSVSEPPANFYPWMKAHGDS 178


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 368 SH*AEAHGNVREEPAPHKGRH*AREISLNHYFITVT 475
           +H  E +  V+EEP     R    +  LNH+  +VT
Sbjct: 40  THNNEMYHRVKEEPIYESCRFSINQPYLNHFDNSVT 75



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 217 SSQWRRLQQTEAQSFHWCRRHGDS 146
           S++   + +  A  + W + HGDS
Sbjct: 155 SAEENSVSEPPANFYPWMKAHGDS 178


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,594
Number of Sequences: 336
Number of extensions: 3453
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)