Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0917
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.28
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.5
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.4
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.4
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 26 4.5
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 6.0
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.0
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 7.9
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.9
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.9
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.9
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.9
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.9
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.28
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 260 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 424
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 28 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 207
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 208 TEKTQKSLFDGI 243
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 294 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 413
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 318 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 449
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 212 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 81
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKNPLPTKDVIE 434
+H E+ E P+ ++ + EKEK+ + +E+ P H T +K+P+ +
Sbjct: 801 RHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEKPKKLR 860
Query: 435 QEKSA 449
+++ A
Sbjct: 861 KDRYA 865
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 219 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 115
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 125 SSKASTPAVSVTSTPMKRLC-FRLLKTSPLR--RPRSLYST-VSRSLIEPAEAHRDSGEE 292
S++ STP V + + + F L ++P+R R R +S +SRS+ + + +R + EE
Sbjct: 325 STEPSTPNVQKSPNRLPPVGNFSLPPSAPVREKRNRPAHSAQISRSISKTSRMYRQTAEE 384
Query: 293 P 295
P
Sbjct: 385 P 385
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 327 KEKNKFLNGIENFDPTKLKHTETCEKN 407
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 WVFSVATSSADGSTIFSLVSTSRRQL 144
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 WVFSVATSSADGSTIFSLVSTSRRQL 144
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 WVFSVATSSADGSTIFSLVSTSRRQL 144
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 221 WVFSVATSSADGSTIFSLVSTSRRQL 144
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 224 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 126
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,676
Number of Sequences: 5004
Number of extensions: 57459
Number of successful extensions: 193
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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