Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0917
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.0  
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222           29   3.5  
01_06_0241 - 27813076-27813622,27813695-27814125                       29   3.5  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   3.5  
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    28   6.2  
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234...    28   8.2  
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812...    28   8.2  
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478...    28   8.2  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 112 DLKSQLEGFNTSCLRDVDTNEKIVL 186
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
          Length = 212

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 119 RVSSKASTPAVSVTSTPMKRLCFR 190
           +VSS++S+P  SVT+  ++ +CFR
Sbjct: 72  QVSSQSSSPVESVTTATLRPICFR 95


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 421
           +EP   H  + ++     R +R+     ++ + HR  RS H A  +  V +    H+
Sbjct: 22  VEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 166
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 95  SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRSLIEP 262
           SP +      SS    P +++ + P  R       + PL    R  R   + V+R  IEP
Sbjct: 10  SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69

Query: 263 AEAHRDSGEEPAS 301
           A   R   EEP S
Sbjct: 70  AMGRRQQPEEPDS 82


>11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,
            2349688-2350045,2350818-2351177,2351321-2351419,
            2351856-2351948,2352078-2352215,2352389-2352476,
            2352682-2352770,2353113-2353178,2353370-2353481,
            2354702-2354901
          Length = 1185

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 262  WLDQTSRYRRIKTSGSSQWRRLQQTE 185
            W DQ  RYR+++T  S  + R   TE
Sbjct: 1056 WSDQMERYRQLRTVASEAFFRCSMTE 1081


>03_05_0070 -
           20478396-20478505,20478605-20478780,20481162-20481265,
           20481346-20481504,20481718-20481857,20482222-20482311,
           20482902-20482970,20484295-20484516,20486175-20486293,
           20486377-20486492,20488058-20488146,20488790-20488883
          Length = 495

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296


>02_03_0171 +
           15945591-15945681,15947068-15947138,15947715-15947817,
           15948189-15948328,15948535-15948693,15948775-15948878,
           15950373-15950548,15952643-15952832,15953704-15953803,
           15954171-15954339,15954908-15954990,15955073-15955149,
           15955386-15955557
          Length = 544

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 88  KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 180
           K+L +   DLKS+LEG+NT    D++  + +
Sbjct: 88  KELDERMHDLKSELEGYNTGDSDDINKKKAL 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,366,587
Number of Sequences: 37544
Number of extensions: 401826
Number of successful extensions: 1268
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1268
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)