Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0917
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 56 2e-08
U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (gr... 30 1.4
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 28 5.6
AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical ... 28 5.6
Z74037-2|CAD36492.1| 441|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z74037-1|CAA98492.1| 510|Caenorhabditis elegans Hypothetical pr... 27 9.8
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 27 9.8
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/61 (47%), Positives = 39/61 (63%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
+LK ET EKN LP K+ + EK+ + ++ IE+FD TKL T EK LP+ D I+QE
Sbjct: 23 ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82
Query: 441 K 443
K
Sbjct: 83 K 83
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/64 (40%), Positives = 37/64 (57%)
Frame = +3
Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE 434
S++L T +EK LP D I+ EK+ + + I NF LK TET EKN LP+ +
Sbjct: 59 STKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVA 118
Query: 435 QEKS 446
+EK+
Sbjct: 119 REKT 122
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 255
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FD
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 124 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 252
++E F+++ L EKIVLPSA+D+ EK L D I F
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95
Score = 33.9 bits (74), Expect = 0.11
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 79 PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 219
PS D+ K +L ++ F + L+ +T EK VLPS DVA EKT
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122
>U64851-1|AAC47990.2| 186|Caenorhabditis elegans Ground-like (grd
related) protein12 protein.
Length = 186
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -1
Query: 605 CTSPLPRQCCPLYKNKNKTCNGRRKSI*LTSI*NXAILA 489
CT P P CC N TCNG+R+ LT + N +A
Sbjct: 50 CTPPSPPACC----NTCGTCNGKRRRRHLTMLSNATYVA 84
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +2
Query: 125 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEP 295
SS AS A SVT T ++ + + + KT P R +SL + L PA+ + EEP
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEP 309
>AF022981-2|AAG24200.1| 236|Caenorhabditis elegans Hypothetical
protein W03F9.2a protein.
Length = 236
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 368
KHTET+++ P +K A+K N L +E N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227
>Z74037-2|CAD36492.1| 441|Caenorhabditis elegans Hypothetical
protein F57B7.1b protein.
Length = 441
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 167 PMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE 268
P K C R+ S +RRP YST + ++P E
Sbjct: 380 PAKVRCLRMSSPS-IRRPSDAYSTTKMTFLKPNE 412
>Z74037-1|CAA98492.1| 510|Caenorhabditis elegans Hypothetical
protein F57B7.1a protein.
Length = 510
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 167 PMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE 268
P K C R+ S +RRP YST + ++P E
Sbjct: 380 PAKVRCLRMSSPS-IRRPSDAYSTTKMTFLKPNE 412
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 323 GEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 460
G+ + Q P+ + RS + G++ P P A EI L+HY
Sbjct: 320 GQNQPQQPQYQQHPRSQSVDPSGDMNGGPRPIHQNFSASEIELHHY 365
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,439,607
Number of Sequences: 27780
Number of extensions: 332909
Number of successful extensions: 1136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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