Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   5.5  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   9.7  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   9.7  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   9.7  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 249 IVDGIVNSNYDEDHTNSCRVPFTDFLFDCGGNEADLSHLFLSC 121
           I D   + N  E    S R+  T+++ DC      L++ F SC
Sbjct: 62  ICDDFSSPNVQEGSKRSLRLAKTNWIRDCVDKNTLLNYSFYSC 104


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 359 HYRNNYLLYKIREALTSLDTPVTFKWVPSH 270
           H+R+ + L +IR  L+  D+ ++F   P H
Sbjct: 44  HHRHMFPLARIRSELSEQDSSISFTHDPLH 73


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 285 MGALS*GYQGNEIVDGIV-NSNYDEDHTNSCRVPFTDFLFD 166
           MGA S    GNE++DG++ N +    +++     F+D+ ++
Sbjct: 283 MGAASWTDPGNEVIDGLISNQSIPVVYSHRTMDGFSDYYYN 323


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 285 MGALS*GYQGNEIVDGIV-NSNYDEDHTNSCRVPFTDFLFD 166
           MGA S    GNE++DG++ N +    +++     F+D+ ++
Sbjct: 283 MGAASWTDPGNEVIDGLISNQSIPVVYSHRTMDGFSDYYYN 323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,743,399
Number of Sequences: 5004
Number of extensions: 56907
Number of successful extensions: 137
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)