Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1121 + 8893177-8893199,8893260-8893287,8893656-8893730,889...    28   7.6  

>01_01_1121 +
           8893177-8893199,8893260-8893287,8893656-8893730,
           8894748-8894813,8894917-8894959,8895102-8895150,
           8895899-8895992,8896078-8896130,8896921-8897005,
           8897242-8897344,8897421-8897513,8897985-8898051,
           8898309-8898375,8898463-8898516,8898632-8898766
          Length = 344

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +3

Query: 543 SHVSIYL*SIKVIQGLEIKKTLGINPLE 626
           SHVS+YL ++  + GL  K +L +NP++
Sbjct: 150 SHVSLYLSAVFSLSGLVGKPSLKVNPVK 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,230,885
Number of Sequences: 37544
Number of extensions: 311964
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)