Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7)                     32   0.48 
SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_40407| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)                 29   2.5  
SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17)                 29   2.5  
SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)          29   2.5  
SB_11322| Best HMM Match : Pkinase_C (HMM E-Value=4.1)                 29   2.5  
SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)                 29   2.5  
SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)                  29   2.5  
SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)                 29   3.4  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   4.4  

>SB_46946| Best HMM Match : RVT_1 (HMM E-Value=0.7)
          Length = 367

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 24/92 (26%), Positives = 44/92 (47%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T ++  I N   IL ++++ ++  L++ D  + 
Sbjct: 194 NQLYAHVTENVLLPELQSAYRKSYSTETALFK-IAN--DILINMKSQHVTLLVLLDLSAA 250

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 251 FETIDHCILLQRLNTSFGVAGDALRWLTSYLT 282


>SB_15883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y H+TE+V    L S +       T +   + N   IL ++ + ++  L++ D  + 
Sbjct: 85  NQLYAHITENVLLPELQSAYRKSYSTETAL---LKNANDILINMNSQHVTLLVLLDLSAA 141

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 142 FDTIDHCILLQRLNTSFGVAGDALKWLTSYLT 173


>SB_40407| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
          Length = 290

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 43/92 (46%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  + 
Sbjct: 87  NQLYAHVTENVLLPELQSAYRKSHSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAA 143

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL+ L + +T
Sbjct: 144 FDTIDHCILLQRLNTSFGVAGDALSWLTSYLT 175


>SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17)
          Length = 271

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  + 
Sbjct: 55  NQLYAHVTENVLLPELQSAYRKSYSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAA 111

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 112 FDTIDHCILLQRLNTSFGVAGDALRWLTSYLT 143


>SB_22736| Best HMM Match : F5_F8_type_C (HMM E-Value=6.4e-24)
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  + 
Sbjct: 148 NQLYAHVTENVLLPELQSAYRKSYSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAA 204

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 205 FDTIDHCILLQRLNTSFGVAGDALRWLTSYLT 236


>SB_11322| Best HMM Match : Pkinase_C (HMM E-Value=4.1)
          Length = 236

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/92 (23%), Positives = 42/92 (45%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y H+TE+V    L S +       T +   + N   IL ++ + ++  L++ D  + 
Sbjct: 85  NQLYAHITENVLLPELQSAYRKSYSTETAL---LKNANDILINMNSTHVTLLVLLDLSAA 141

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 142 FDTIDHCILLQRLNTSFGVAGDALRWLTSYLT 173


>SB_43483| Best HMM Match : RVT_1 (HMM E-Value=9.4e-33)
          Length = 919

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 43/92 (46%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  + 
Sbjct: 687 NQLYAHVTENVLLPELQSAYRKSHSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAA 743

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL+ L + +T
Sbjct: 744 FDTIDHCILLQRLNTSFGVAGDALSWLTSYLT 775


>SB_8835| Best HMM Match : RVT_1 (HMM E-Value=1.2e-36)
          Length = 979

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/92 (26%), Positives = 42/92 (45%)
 Frame = -2

Query: 566 SQIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSV 387
           +Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  + 
Sbjct: 550 NQLYAHVTENVLLPELQSAYRKSYSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAA 606

Query: 386 LMALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
              +D C +  R N       +AL  L + +T
Sbjct: 607 FDTIDHCILLQRLNTSFGVAGDALRWLTSYLT 638


>SB_18991| Best HMM Match : RVT_1 (HMM E-Value=2.8e-34)
          Length = 899

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/91 (26%), Positives = 41/91 (45%)
 Frame = -2

Query: 563 QIYRHVTESVQCVRLLSIHGS*VMCRTTMYSAIINC*KILQSLQNDNMEFLIISDSKSVL 384
           Q+Y HVTE+V    L S +       T +   I N   IL ++ + ++  L++ D  +  
Sbjct: 315 QLYAHVTENVLLPELQSAYRKSYSTETALLK-IAN--DILINMNSQHVTLLVLLDLSAAF 371

Query: 383 MALDKCHIHYRNNYLLYKIREALTSLDTPVT 291
             +D C +  R N       +AL  L + +T
Sbjct: 372 DTIDHCILLQRLNTSFGVAGDALKWLTSYLT 402


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 148 RLIPPLLELPDF*ISTFNTSNRYYEIDG 65
           R  PPL+  PDF    F +S +Y+ + G
Sbjct: 353 REFPPLILRPDFTCKNFESSEKYFHLHG 380


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,379,192
Number of Sequences: 59808
Number of extensions: 389557
Number of successful extensions: 926
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)