Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    38   0.012
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       34   0.20 
AE013599-1248|AAF58685.2|  138|Drosophila melanogaster CG9067-PA...    28   9.8  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 37.9 bits (84), Expect = 0.012
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 446  LQSLQNDNMEFLIISDSKSVLMALDKCHIHYRNNYLLYKIREALTSLDTPVTFKWVPSHR 267
            ++  +N   +F+I SDS   L A+D       N++   +IR  +T     +   W+P H 
Sbjct: 996  IELTKNRRGKFIICSDS---LSAVDSIQNTNNNSFYPSRIRSLITQHAPKIKIMWIPGHS 1052

Query: 266  GIKG 255
            GIKG
Sbjct: 1053 GIKG 1056


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 33.9 bits (74), Expect = 0.20
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -2

Query: 413  LIISDSKSVLMALDKCHIHYRNNYLLYKIREALTSLDTPVTFKWVPSHRGIKG 255
            +I +DS S L A+   +    N+    ++R  L+S    +T  WVPSH+GI G
Sbjct: 1022 VICTDSLSSLSAIRNWN---HNDPTTQEVRHILSSHPKKITLLWVPSHQGIHG 1071


>AE013599-1248|AAF58685.2|  138|Drosophila melanogaster CG9067-PA
           protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 452 KILQSLQNDNMEFLIISDSKSVLMALDKCHIHYRNNYLLY 333
           KI   + N  ++F+++ DS +V +  ++    +RN +LLY
Sbjct: 67  KIYGFVTNTRVKFIVVIDSSNVALRENEVRAIFRNLHLLY 106


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,992,288
Number of Sequences: 53049
Number of extensions: 570210
Number of successful extensions: 1160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1160
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2827453950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)