Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex det...    24   1.5  
DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex det...    24   1.5  
DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex det...    24   1.5  
DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex det...    24   1.5  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    24   1.5  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.5  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    24   1.5  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    24   1.5  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    24   1.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.5  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.0  

>DQ325094-1|ABD14108.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 87  NNYNYNNYNNNYKPLYYNINYI 108


>DQ325093-1|ABD14107.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 87  NNYNYNNYNNNYKPLYYNINYI 108


>DQ325092-1|ABD14106.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 87  NNYNYNNYNNNYKPLYYNINYI 108


>DQ325091-1|ABD14105.1|  175|Apis mellifera complementary sex
           determiner protein.
          Length = 175

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 87  NNYNYNNYNNNYKPLYYNINYI 108


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 320 NNYNYNNYNNNYKPLYYNINYI 341


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 320 NNYNYNNYNNNYKPLHYNINYI 341


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 320 NNYNYNNYNNNYKPLYYNINYI 341


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 320 NNYNYNNYNNNYKPLYYNINYI 341


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 341 NNYFYSEYDICLKPLTHFLNLI 406
           NNY Y+ Y+   KPL + +N I
Sbjct: 309 NNYNYNNYNNNYKPLYYNINYI 330


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 515 IGVVRIAPIQSRVYIFVKYKGYTGI 589
           I  +RIA + + V++F K  GY  I
Sbjct: 4   IQTIRIAVLLAIVFLFDKCSGYPSI 28


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -1

Query: 252 EIVDGIVNSNYDEDHTNSC 196
           E+VDG+    + +DH   C
Sbjct: 49  ELVDGMRRGEFPDDHDLQC 67


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,111
Number of Sequences: 438
Number of extensions: 3995
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)