Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0916
         (660 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22870.1 68418.m02674 harpin-induced protein-related / HIN1-r...    31   0.90 
At1g02070.1 68414.m00129 expressed protein                             30   1.2  
At1g10000.1 68414.m01128 expressed protein                             29   3.6  

>At5g22870.1 68418.m02674 harpin-induced protein-related /
           HIN1-related / harpin-responsive protein-related weak
           similarity to hin1 [Nicotiana tabacum] GI:1619321
          Length = 207

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 527 RIAPIQSRVYIFVKYKGYTGIGDKEDPWHQP 619
           RI+   S V IFVK+K  T   D  +P+HQP
Sbjct: 92  RISVYYSSVEIFVKFKDQTLAFDTVEPFHQP 122


>At1g02070.1 68414.m00129 expressed protein
          Length = 131

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -1

Query: 192 VPFTDFLFDCGGNEADLSHLFLSCPTFKFQRLILVTDIMKLMDFDENNQTKHGNSLANNP 13
           V F+D LF CG       H + S    +F     + D  +  D   +N  +HG S +  P
Sbjct: 11  VGFSDKLFSCGHCRCRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSNVARHGGSSSKKP 70

Query: 12  TRS 4
           + S
Sbjct: 71  SSS 73


>At1g10000.1 68414.m01128 expressed protein
          Length = 303

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/59 (28%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
 Frame = -2

Query: 449 ILQSLQNDNMEFLIISDSKSVLMALDKCHIHYRNNY-LLYKIREALTSLDTPVTFKWVP 276
           +L +LQ +  + L++SDSKS++ AL+  ++     + LL +IR ++ +    ++F+++P
Sbjct: 216 MLHALQLERSDLLVLSDSKSIVDALNS-NVSLNEIFGLLVEIR-SIRNRFRSISFQFIP 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,752,973
Number of Sequences: 28952
Number of extensions: 275068
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)