Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0915
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.8  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   3.1  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    22   5.5  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.5  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.5  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   9.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.6  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 214 KECNIDLPWYQGKVF 258
           ++CN+   WY  KVF
Sbjct: 218 EKCNLTFSWYSKKVF 232


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 73  NLKINNRKLPSFVNWNWVV 129
           +LK+ N+KLP F+   W V
Sbjct: 527 SLKLKNKKLPPFLAEIWDV 545


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 372 LNYIFQADHYPEDYNNV--TSMLDIDRSL 452
           L+ +F AD Y   Y+N+    +L  DR L
Sbjct: 13  LSVVFAADKYTTKYDNIDLNQILKSDRLL 41


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 350 ILYIIKFSYQAFKITCAIIIGIFKTGRKYFV 258
           I++I   +Y  F+I  A + GIF T   YF+
Sbjct: 340 IVHITAGNY--FEINKATLCGIFGTTTTYFI 368


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 350 ILYIIKFSYQAFKITCAIIIGIFKTGRKYFV 258
           I++I   +Y  F+I  A + GIF T   YF+
Sbjct: 340 IVHITAGNY--FEINKATLCGIFGTTTTYFI 368


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 517 KYDDMFLLCILNIRSCKSLSTPK 449
           KY+ +  + + N R CK   T K
Sbjct: 22  KYNSILNIALKNFRLCKKHKTKK 44


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 517 KYDDMFLLCILNIRSCKSLSTPK 449
           KY+ +  + + N R CK   T K
Sbjct: 22  KYNSILNIALKNFRLCKKHKTKK 44


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,789
Number of Sequences: 336
Number of extensions: 3527
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)